JAL-468 JAL-936 sort alignment by tree and autosort for new tree

[jalview.git] / help / html / calculations / treeviewer.html

diff --git a/help/html/calculations/treeviewer.html b/help/html/calculations/treeviewer.html
index 32db2ce..514b8c8 100755 (executable)
--- a/help/html/calculations/treeviewer.html
+++ b/help/html/calculations/treeviewer.html
@@ -76,8 +76,8 @@ the tree. Tree imported from outside may also contain bootstrap information,
 and additional leaves from sequences not present in the associated
 alignment.
 </p>
-<p>The view menu contains options controlling the way a tree is
-rendered and labelled:
+<p>The view menu mostly contains options controlling the way a tree is
+rendered and labeled:
 <ul>
 <li><strong>Fit to Window</strong><p>
 The tree layout will be scaled to fit in the  display
@@ -99,12 +99,19 @@ Toggles the display of a '*' at the beginning of a leaf label to
 indicate that there is no sequence corresponding to that leaf in the
 associated alignment.
 </p></li>
-<li><strong>Associate Leaves with ...</strong><p>
-Only visible when there are <a href="../features/multipleviews.html">multiple views</a> of the same
-alignment to show and edit which alignment views are associated with
-the leaves of the displayed tree.
-</p>
-</ul>
+               <li><strong>Sort Alignment By Tree</strong>
+               <p>
+                               Sorts any associated alignment views using the current tree. (<em>Only
+                                       available in the Jalview Desktop</em>)
+                       </p>
+               </li>
+               <li><strong>Associate Leaves with ...</strong>
+               <p>
+                               Only visible when there are <a href="../features/multipleviews.html">multiple
+                                       views</a> of the same alignment to show and edit which alignment views
+                               are associated with the leaves of the displayed tree.
+                       </p>
+       </ul>
 </p>
 </body>
 </html>