+++ /dev/null
-<html>
-<!--
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- -->
-<head>
-<title>Above PID Colours</title>
-<style type="text/css">
-<!--
-td {
- text-align: center;
-}
--->
-</style>
-</head>
-
-<body>
- <p>
- <strong>Colouring above a percentage identity threshold</strong>
- </p>
- <p>Selecting this option causes the colour scheme to be applied to
- only those residues that occur in that column at least a certain
- percentage of the time. For instance, selecting the threshold to be
- 100 will only colour those columns with 100% identity, and selecting 50 will shade residues appearing in least 50% of the rows (or sequences) in each column.</p>
- <p>The percentage calculation may include or exclude gaps in the column, depending on the option selected for the <a href="../calculations/consensus.html">consensus calculation</a>.</p>
- <p>With a threshold of 0, colouring is unchanged.</p>
-</body>
-</html>
git://source.jalview.org / jalview.git / blobdiff