+++ /dev/null
-<html>
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- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- *
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- *
- * Jalview is free software: you can redistribute it and/or
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-<head>
-<title>User Defined Colours</title>
-</head>
-<body>
- <p>
- <strong>User Defined Colours</strong>
- </p>
- <p>
- <img src="userDefined_java7.gif" width="815" height="402">
- </p>
- <p>
- You may define any number of new colour schemes, each with a unique
- name. <br> <br> Each of the residues in a colour scheme
- may be assigned any chosen colour. <br> Select one or more
- residues, then select the desired colour.<br /> Use Ctrl-click to
- select multiple residues, or click then Shift-click to select a
- block.<br /> Note that the currently selected buttons are
- highlighted by a lighter text colour.
- <p>
- The <strong>Case Sensitive</strong> option allows you to choose
- distinct colours for upper and lower case residue codes.
- <p>
- The <strong>Colour All Lower Case </strong> option allows you to apply a selected colour
- to all lower case residues.
- <p>
- Click <strong>Apply</strong> or <strong>OK</strong> to set your new
- colours on the active alignment window.<br /> Click <strong>Cancel</strong>
- to undo your changes if you pressed the <strong>Apply</strong>
- button.
- </p>
- If you save your colour scheme with a unique name, the colour scheme
- name will be added to the
- <strong>Colour</strong> menu on each new alignment window.
- <br>
- <br> Any saved colour schemes will be automatically loaded the
- next time you use Jalview.
- <br>
-</body>
-</html>