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- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
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-<head>
-<title>DAS Features</title>
-</head>
-
-<body>
- <p>
- <strong>DAS Sequence Feature Retrieval</strong>
- </p>
- <p>Jalview includes a client for retrieving sequences and their
- features via the Distributed Annotation System.</p>
- <ol>
- <li>Open the Feature Settings panel by selecting "View
- -> Feature Settings..."</li>
- <li>Click on the "<a href="dassettings.html">DAS
- Settings</a>" tabbed pane.
- </li>
- <li>Select the sources to use for DAS feature retrieval, then
- click the "Fetch DAS Features" button.
- <ul>
- <li>Cancelling Feature Retrieval<br> Press the <strong>Cancel
- Fetch</strong> button to immediately stop feature retrieval. This
- will not remove any features already added to the alignment,
- but will halt any outstanding DAS requests.<em>The cancel
- fetch button is of particular use when one or more DAS
- annotation servers are not responding!</em>
- </ul>
- </li>
- </ol>
- <p>
- If your DAS source selection contains sources which use UniProt
- accession ids, you will be asked whether Jalview should find UniProt
- Accession ids for the given sequence names. It is important to
- realise that many DAS sources only use UniProt accession ids, rather
- than Swissprot/UniProt sequence names.<br> The <a
- href="../webServices/dbreffetcher.html">database
- reference fetcher</a> documentation describes how Jalview discovers
- what database references are appropriate for the sequences in the
- alignment.
- <ul>
- <li><em>Note</em><br> Please remember to save your
- alignment if either the start/end numbering, or the sequence IDs
- were updated during the ID retrieval process.</li>
- </ul>
- <p>
- <p>
- <em>DAS support was introduced in Jalview Version 2.1.</em>
- </p>
- <br />
- <p>
- <em>The DAS registry at http://www.dasregistry.org was
- decommissioned early in 2015. An unmaintained mirror is currently
- hosted at http://www.ebi.ac.uk/das-srv/registry/.</em>
- </p>
- <p>
-</body>
-</html>