merge from develop

[jalview.git] / help / html / features / preferences.html

diff --git a/help/html/features/preferences.html b/help/html/features/preferences.html
index 928ea2c..c42bace 100755 (executable)
--- a/help/html/features/preferences.html
+++ b/help/html/features/preferences.html
@@ -142,7 +142,7 @@ details as necessary. Web Services will not work if you are using a
 proxy server and do not enter the settings here.</p>
 <p><em>Usage statistics, Questionnaire and Version checks</em><br>
 Uncheck these options to prevent Jalview from submitting usage
-statistics to google analytics, checking for jalview questionnaires or
+statistics to google analytics, checking for Jalview questionnaires or
 retrieving details of the latest release version (at www.jalview.org).
 See the <a href="../privacy.html">user privacy statement</a> for more
 information.</p>
@@ -163,7 +163,7 @@ style for EPS export:
        EPS files will be a mixture of text and lineart. This produces compact
        files that can be edited easily in programs like Microsoft Word and
        Adobe Illustrator, but can be problematic if the fonts available to
-       jalview are not accessible by the program reading the EPS file.
+       Jalview are not accessible by the program reading the EPS file.
 </ul>
 <p><em>Automatically set ID width</em><br>
 When enabled, the column containing sequence and annotation labels at the left hand side of an exported figure will be made large enough to display each sequence ID and annotation label in its own line. Enable this if you have particularly long sequence IDs and need to generate EPS or PNG figures or web pages.</p>
@@ -179,6 +179,11 @@ sequence positions appended to each sequence id: <pre>
 </pre>
 <p>If the boxes are left unchecked for a particular format, the
 sequence limits will not be appended to the sequence id.</p>
+<p><em>Embed BioJSON to HTML export</em></p>
+<p>When this option is enabled, Jalview embeds <a href="bioJsonFormat.html">BioJSON</a> data within 
+HTML files exported from Jalview at generation time. This enables the exported HTML files
+to be extracted and imported back into the Jalview desktop application at a later time.
+
 <p><em>Use Modeller Output</em></p>
 <p>This option only applies to PIR format output. Jalview
 automatically reads PIR files with sequence descriptions compatible with