JAL-2189 format help

[jalview.git] / help / html / features / preferences.html

diff --git a/help/html/features/preferences.html b/help/html/features/preferences.html
index 4af43de..6a8c86c 100755 (executable)
--- a/help/html/features/preferences.html
+++ b/help/html/features/preferences.html
@@ -63,8 +63,8 @@
     </li>
     <li>The <a href="../webServices/webServicesPrefs.html"><strong>&quot;Web
           Service&quot;</strong> Preferences</a> tab allows you to configure the <a
-      href="http://www.compbio.dundee.ac.uk/jabaws"
-    >JABAWS</a> servers that Jalview uses, and change the layout of the
+      href="http://www.compbio.dundee.ac.uk/jabaws">JABAWS</a>
+      servers that Jalview uses, and change the layout of the
       alignment's Web Services menu.
     </li>
   </ul>
@@ -78,9 +78,8 @@
   </p>
   <p>
     <em>Open Overview Window</em> - When this is selected, the <a
-      href="overview.html"
-    >alignment overview</a> panel is opened by default for a new alignment
-    window.
+      href="overview.html">alignment overview</a> panel is opened
+    by default for a new alignment window.
   </p>
   <p>
     <em>Show Annotations</em> - If this is selected the new window will
@@ -155,9 +154,9 @@
     <em>Open file</em> - If this is selected then the default alignment
     file will be opened when Jalview is started. You can change the
     default file by clicking on file name and either typing in the file
-    path or selecting it from the file chooser window.<br />
-    <em>Note: The default example alignment is updated periodically
-      to demonstrate new features in Jalview.</em>
+    path or selecting it from the file chooser window.<br /> <em>Note:
+      The default example alignment is updated periodically to
+      demonstrate new features in Jalview.</em>
   </p>
   <p>
     <a name="colours"><strong>&quot;Colours&quot;
@@ -172,9 +171,9 @@
   <p>
     <em>Annotation Shading Default</em> - set the default minimum and
     maximum colours used when <a
-      href="../colourSchemes/annotationColouring.html"
-    >Colour by Annotation...</a> is selected from the alignment window's
-    colours menu.
+      href="../colourSchemes/annotationColouring.html">Colour
+      by Annotation...</a> is selected from the alignment window's colours
+    menu.
   </p>
   <p>
     <a name="structure"><strong>&quot;Structure&quot;
@@ -216,8 +215,8 @@
     <em>URL Link From Sequence ID</em><br> These definitions are
     used to generate URLs from a sequence's ID or database cross
     references. Read more about <a
-      href="../webServices/urllinks.html#urllinks"
-    >configuring URL links here</a>.
+      href="../webServices/urllinks.html#urllinks">configuring
+      URL links here</a>.
   </p>
   <p>
     <em>Default Browser (Unix)</em><br> Its difficult in Java to
@@ -292,11 +291,10 @@
   </p>
   <p>
     When this option is enabled, Jalview embeds <a
-      href="bioJsonFormat.html"
-    >BioJSON</a> data within HTML files exported from Jalview at
-    generation time. This enables the exported HTML files to be
-    extracted and imported back into the Jalview desktop application at
-    a later time.
+      href="bioJsonFormat.html">BioJSON</a> data within HTML files
+    exported from Jalview at generation time. This enables the exported
+    HTML files to be extracted and imported back into the Jalview
+    desktop application at a later time.
   <p>
     <em>Use Modeller Output</em>
   </p>