Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures

[jalview.git] / help / html / features / seqfetch.html

diff --git a/help/html/features/seqfetch.html b/help/html/features/seqfetch.html
index 44aa1c2..e726c49 100755 (executable)
--- a/help/html/features/seqfetch.html
+++ b/help/html/features/seqfetch.html
@@ -26,19 +26,13 @@
   <p>
     <strong>Sequence Fetcher</strong>
   </p>
-  <p>
-    Jalview can retrieve sequences from certain databases using either
-    the DBFetch service provided by the EMBL European Bioinformatics
-    Institute, or, since Jalview 2.4, DAS servers capable of the <em>sequence</em>
-    command (configured in <a href="dassettings.html">DAS settings</a>).
-  </p>
-  <p>The Sequence Fetcher can be opened via the &quot;File&quot;
+       <p>Jalview can retrieve sequences from a range of sequence, 3D
+               structure, genomic and domain family databases provided by EMBL-EBI.</p>
+       <p>The Sequence Fetcher can be opened via the &quot;File&quot;
     menu on the main desktop in order to retrieve sequences as a new
     alignment, or opened via the &quot;File&quot; menu of an existing
     alignment to import additional sequences. There may be a short delay
-    when the sequence fetcher is first opened, whilst Jalview compiles
-    the list of available sequence datasources from the currently
-    defined DAS server registry.</p>
+    when the sequence fetcher is first opened, whilst Jalview contacts each database's web API.</p>
   <p>
     Every time a new fetcher is opened, you will need to <strong>select
       the database you want to retrieve sequences</strong> from the database
@@ -51,11 +45,6 @@
     tooltips are shown if you mouse over some sources, explaining what
     the database will retrieve. You can select one by using the up/down
     arrow keys and hitting return, or by double clicking with the mouse.
-    <br />
-    <em>If you have DAS sources enabled, then you may have several
-      sources for the same type of sequence identifier, and these will
-      be grouped together in a sub-branch branch labeled with the
-      identifier.</em>
   </p>
   <p>Once you have selected a sequence database, its fetcher dialog
     will open. Jalview provides two types of dialog:</p>
@@ -82,17 +71,6 @@
       currently selected database into the retrieval box. Finally, press
       &quot;OK&quot; to initiate the retrieval.</li>
   </ol>
-  <p>
-    <strong>Only retrieving part of a sequence</strong>
-  </p>
-  <p>
-    When using DAS sources (indicated by a &quot;<em>(DAS)</em>&quot;),
-    you can append a range in addition to a sequence ID. For example, to
-    retrieve 50 residues starting at position 35 in UNIPROT sequence
-    P73137 using the UNIPROT DAS server, you would enter
-    &quot;'P73137:35,84'.<br /> <em>Full support for DAS range
-      queries was introduced in Jalview 2.8</em>
-  </p>
 
   <p>If you use the WSDBFetch sequence fetcher services (EMBL,
     UniProt, PFAM, and RFAM) in work for publication, please cite:</p>