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+<head>
+<title>UniProtKB query fields</title>
+</head>
+
+<body>
+ <p>
+ <strong>UniProtKB query fields</strong>
+ </p>
+<p>Supported query fields for searching specific data in UniProtKB (see also <a href="text-search">query syntax</a>).</p>
+
+<table border="1" width="95%">
+ <tr>
+ <th>Field</th>
+ <th>Example</th>
+ <th>Description</th>
+ </tr>
+ <tr>
+ <td>accession</td>
+ <td>
+ <code>accession:P62988</code>
+ </td>
+ <td>
+ Lists all entries with the primary or secondary
+ accession number P62988.
+ </td>
+ </tr>
+ <tr>
+ <td>active</td>
+ <td>
+ <code>active:no </code>
+ </td>
+ <td>
+ Lists all obsolete entries.
+ </td>
+ </tr>
+ <tr>
+ <td>annotation</td>
+ <td>
+ <code>
+ annotation:(type:non-positional)
+ <br />
+ annotation:(type:positional)
+ <br />
+ annotation:(type:mod_res "Pyrrolidone carboxylic acid" evidence:experimental)
+ </code>
+ </td>
+ <td>
+ Lists all entries with:
+ <ul>
+ <li>any general annotation (comments [CC])</li>
+ <li>any sequence annotation (features [FT])</li>
+ <li>at least one amino acid modified with a Pyrrolidone carboxylic acid group</li>
+ </ul>
+ </td>
+ </tr>
+ <tr>
+ <td>author</td>
+ <td>
+ <code>
+ author:ashburner
+ </code>
+ </td>
+ <td>
+ Lists all entries with at least one reference co-authored by Michael Ashburner.
+ </td>
+ </tr>
+ <tr>
+ <td>cdantigen</td>
+ <td>
+ <code>
+ cdantigen:CD233
+ </code>
+ </td>
+ <td>
+ Lists all entries whose cluster of differentiation number is CD233.
+ </td>
+ </tr>
+ <tr>
+ <td>citation</td>
+ <td>
+ <code>
+ citation:("intracellular structural proteins")
+ <br />
+ citation:(author:ashburner journal:nature)
+ citation:9169874
+ </code>
+ </td>
+ <td>
+ Lists all entries with a literature citation:
+ <ul>
+ <li>containing the phrase "intracellular structural proteins" in either title or abstract</li>
+ <li>co-authored by Michael Ashburner and published in Nature</li>
+ <li>with the PubMed identifier 9169874</li>
+ </ul>
+ </td>
+ </tr>
+ <tr>
+ <td>cluster</td>
+ <td>
+ <code>
+ cluster:UniRef90_A5YMT3
+ </code>
+ </td>
+ <td>
+ Lists all entries in the UniRef 90% identity cluster whose
+ representative sequence is UniProtKB entry A5YMT3.
+ </td>
+ </tr>
+ <tr>
+ <td>count</td>
+ <td>
+ <code>
+ annotation:(type:transmem count:5)<br />
+ annotation:(type:transmem count:[5 TO *])<br />
+ annotation:(type:cofactor count:[3 TO *])
+ </code>
+ </td>
+ <td>Lists all entries with:
+ <ul>
+ <li>exactly 5 transmembrane regions</li>
+ <li>5 or more transmembrane regions</li>
+ <li>3 or more Cofactor comments</li>
+ </ul>
+ </td>
+ </tr>
+ <tr>
+ <td>created</td>
+ <td>
+ <code>
+ created:[20121001 TO *]<br />
+ reviewed:yes AND created:[current TO *]
+ </code>
+ </td>
+ <td>
+ Lists all entries created since October 1st 2012.<br />
+ Lists all new UniProtKB/Swiss-Prot entries in the last release.
+ </td>
+ </tr>
+ <tr>
+ <td>database</td>
+ <td>
+ <code>
+ database:(type:pfam)
+ <br />
+ database:(type:pdb 1aut)
+ </code>
+ </td>
+ <td>
+ Lists all entries with:
+ <ul>
+ <li>a cross-reference to the Pfam database</li>
+ <li>a cross-reference to the PDB database entry 1aut</li>
+ </ul>
+
+ </td>
+ </tr>
+ <tr>
+ <td>domain</td>
+ <td>
+ <code>
+ domain:VWFA
+ </code>
+ </td>
+ <td>
+ Lists all entries with a Von Willebrand factor type A domain described
+ in the 'Family and Domains' section.
+ </td>
+ </tr>
+ <tr>
+ <td>ec</td>
+ <td>
+ <code>
+ ec:3.2.1.23
+ </code>
+ </td>
+ <td>
+ Lists all beta-galactosidases.
+ </td>
+ </tr>
+ <tr>
+ <td>evidence</td>
+ <td>
+ <code>
+ annotation:(type:signal evidence:ECO_0000269)<br />
+ (type:mod_res phosphoserine evidence:ECO_0000269)<br />
+ annotation:(type:function AND evidence:ECO_0000255)
+ </code>
+ </td>
+ <td>Lists all entries with:
+ <ul>
+ <li>a signal sequence whose positions have been experimentally proven</li>
+ <li>experimentally proven phosphoserine sites</li>
+ <li>a function manually asserted according to rules</li>
+ </ul>
+ </td>
+ </tr>
+ <tr>
+ <td>family</td>
+ <td>
+ <code>
+ family:serpin
+ </code>
+ </td>
+ <td>
+ Lists all entries belonging to the Serpin family of proteins.
+ </td>
+ </tr>
+ <tr>
+ <td>fragment</td>
+ <td>
+ <code>
+ fragment:yes
+ </code>
+ </td>
+ <td>
+ Lists all entries with an incomplete sequence.
+ </td>
+ </tr>
+
+ <tr>
+ <td>gene</td>
+ <td>
+ <code>
+ gene:HSPC233
+ </code>
+ </td>
+ <td>
+ Lists all entries for proteins encoded by gene HSPC233.
+ </td>
+ </tr>
+ <tr>
+ <td>go</td>
+ <td>
+ <code>
+ go:cytoskeleton
+ <br />
+ go:0015629
+ </code>
+ </td>
+ <td>
+ Lists all entries associated with:
+ <ul>
+ <li>a GO term containing the word "cytoskeleton"</li>
+ <li>the GO term Actin cytoskeleton and any subclasses</li>
+ </ul>
+ </td>
+ </tr>
+ <tr>
+ <td>host</td>
+ <td>
+ <code>
+ host:mouse
+ <br />
+ host:10090
+ <br />
+ host:40674
+ </code>
+ </td>
+ <td>
+ Lists all entries for viruses infecting:
+ <ul>
+ <li>organisms with a name containing the word "mouse"</li>
+ <li>Mus musculus (Mouse)</li>
+ <li>all mammals (all taxa classified under the taxonomy node for Mammalia)</li>
+ </ul>
+ </td>
+ </tr>
+ <tr>
+ <td>id</td>
+ <td>
+ <code>id:P00750</code>
+ </td>
+ <td>
+ Returns the entry with the primary
+ accession number P00750.
+ </td>
+ </tr>
+ <tr>
+ <td>inn</td>
+ <td>
+ <code>
+ inn:Anakinra
+ </code>
+ </td>
+ <td>
+ Lists all entries whose "International Nonproprietary Name" is Anakinra.
+ </td>
+ </tr>
+ <tr>
+ <td>interactor</td>
+ <td>
+ <code>
+ interactor:P00520
+ </code>
+ </td>
+ <td>
+ Lists all entries describing interactions with the protein described by
+ entry P00520.
+ </td>
+ </tr>
+ <tr>
+ <td>keyword</td>
+ <td>
+ <code>
+ keyword:toxin
+ </code>
+ </td>
+ <td>
+ Lists all entries associated with the keyword Toxin.
+ </td>
+ </tr>
+ <tr>
+ <td>length</td>
+ <td>
+ <code>
+ length:[500 TO 700]
+ </code>
+ </td>
+ <td>
+ Lists all entries describing sequences of length between 500 and 700 residues.
+ </td>
+ </tr>
+ <tr>
+ <td>lineage</td>
+ <td />
+ <td>
+ This field is a synonym for the field <code>taxonomy</code>.
+ </td>
+ </tr>
+ <tr>
+ <td>mass</td>
+ <td>
+ <code>
+ mass:[500000 TO *]
+ </code>
+ </td>
+ <td>
+ Lists all entries describing sequences with a mass of at least 500,000 Da.
+ </td>
+ </tr>
+ <tr>
+ <td>method</td>
+ <td>
+ <code>
+ method:maldi
+ <br />
+ method:xray
+ </code>
+ </td>
+ <td>
+ Lists all entries for proteins identified by: matrix-assisted laser
+ desorption/ionization (MALDI), crystallography (X-Ray). The
+ <code>method</code> field searches names of physico-chemical
+ identification methods in the 'Biophysicochemical properties' subsection of the 'Function' section, the 'Publications' and
+ 'Cross-references' sections.
+ </td>
+ </tr>
+ <tr>
+ <td>mnemonic</td>
+ <td>
+ <code>
+ mnemonic:ATP6_HUMAN
+ </code>
+ </td>
+ <td>
+ Lists all entries with entry name (ID) ATP6_HUMAN. Searches also
+ obsolete entry names.
+ </td>
+ </tr>
+ <tr>
+ <td>modified</td>
+ <td>
+ <code>
+ modified:[20120101 TO 20120301]<br />
+ reviewed:yes AND modified:[current TO *]
+ </code>
+ </td>
+ <td>
+ Lists all entries that were last modified between January and March 2012.<br />
+ Lists all UniProtKB/Swiss-Prot entries modified in the last release.
+ </td>
+ </tr>
+ <tr>
+ <td>name</td>
+ <td>
+ <code>
+ name:"prion protein"
+ </code>
+ </td>
+ <td>
+ Lists all entries for prion proteins.
+ </td>
+ </tr>
+ <tr>
+ <td>organelle</td>
+ <td>
+ <code>
+ organelle:Mitochondrion
+ </code>
+ </td>
+ <td>
+ Lists all entries for proteins encoded by a gene of the mitochondrial
+ chromosome.
+ </td>
+ </tr>
+ <tr>
+ <td>organism</td>
+ <td>
+ <code>
+ organism:"Ovis aries"
+ <br />
+ organism:9940
+ <br />
+ organism:sheep
+ <br />
+ </code>
+ </td>
+ <td>
+ Lists all entries for proteins expressed in sheep (first 2 examples) and
+ organisms whose name contains the term "sheep".
+ </td>
+ </tr>
+
+ <tr>
+ <td>plasmid</td>
+ <td>
+ <code>
+ plasmid:ColE1
+ </code>
+ </td>
+ <td>
+ Lists all entries for proteins encoded by a gene of plasmid ColE1.
+ </td>
+ </tr>
+ <tr>
+ <td>proteome</td>
+ <td>
+ <code>
+ proteome:UP000005640
+ </code>
+ </td>
+ <td>
+ Lists all entries from the human proteome.
+ </td>
+ </tr>
+ <tr>
+ <td>proteomecomponent</td>
+ <td>
+ <code>
+ proteomecomponent:"chromosome 1" and organism:9606
+ </code>
+ </td>
+ <td>
+ Lists all entries from the human chromosome 1.
+ </td>
+ </tr>
+ <tr>
+ <td>replaces</td>
+ <td>
+ <code>
+ replaces:P02023
+ </code>
+ </td>
+ <td>
+ Lists all entries that were created from a merge with entry P02023.
+ </td>
+ </tr>
+ <tr>
+ <td>reviewed</td>
+ <td>
+ <code>
+ reviewed:yes
+ </code>
+ </td>
+ <td>
+ Lists all UniProtKB/Swiss-Prot entries.
+ </td>
+ </tr>
+ <tr>
+ <td>scope</td>
+ <td>
+ <code>
+ scope:mutagenesis
+ </code>
+ </td>
+ <td>
+ Lists all entries containing a reference that was used to gather
+ information about mutagenesis.
+ </td>
+ </tr>
+ <tr>
+ <td>sequence</td>
+ <td>
+ <code>
+ sequence:P05067-9
+ </code>
+ </td>
+ <td>
+ Lists all entries containing a link to isoform 9 of the sequence
+ described in entry P05067. Allows searching by specific sequence
+ identifier.
+ </td>
+ </tr>
+ <tr>
+ <td>sequence_modified</td>
+ <td>
+ <code>
+ sequence_modified:[20120101 TO 20120301]<br />
+ reviewed:yes AND sequence_modified:[current TO *]
+ </code>
+ </td>
+ <td>
+ Lists all entries whose sequences were last modified between January and March 2012.<br />
+ Lists all UniProtKB/Swiss-Prot entries whose sequences were modified in the last release.
+ </td>
+ </tr>
+ <tr>
+ <td>source</td>
+ <td>
+ <code>
+ source:intact
+ </code>
+ </td>
+ <td>
+ Lists all entries containing a GO term whose annotation source is the
+ IntAct database.
+ </td>
+ </tr>
+ <tr>
+ <td>strain</td>
+ <td>
+ <code>
+ strain:wistar
+ </code>
+ </td>
+ <td>
+ Lists all entries containing a reference relevant to strain wistar.
+ </td>
+ </tr>
+ <tr>
+ <td>taxonomy</td>
+ <td>
+ <code>
+ taxonomy:40674
+ </code>
+ </td>
+ <td>
+ Lists all entries for proteins expressed in Mammals. This field is used to retrieve
+ entries for all organisms classified below a given taxonomic node taxonomy classification).
+ </td>
+ </tr>
+ <tr>
+ <td>tissue</td>
+ <td>
+ <code>
+ tissue:liver
+ </code>
+ </td>
+ <td>
+ Lists all entries containing a reference describing the protein sequence
+ obtained from a clone isolated from liver.
+ </td>
+ </tr>
+ <tr>
+ <td>web</td>
+ <td>
+ <code>
+ web:wikipedia
+ </code>
+ </td>
+ <td>
+ Lists all entries for proteins that are described in Wikipedia.
+ </td>
+ </tr>
+</table>
+
+</body>
+</html>
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