</tr>
<tr>
<td><div align="center">
- <strong><a name="Jalview.2.8.2">2.8.2</a><br /> <em>18/11/2014</em></strong>
+ <strong><a name="Jalview.2.8.2">2.8.2</a><br /> <em>2/12/2014</em></strong>
</div></td>
<td><em>General</em>
<ul>
+ <li>Updated Java code signing certificate donated by Certum.PL.</li>
<li>Features and annotation preserved when performing pairwise
alignment</li>
<li>RNA pseudoknot annotation can be
user preset</li>
<li>MSA web services warns user if they were launched with
invalid input</li>
- <li>Jalview cannot contact dasregisty (Java 8)</li>
+ <li>Jalview cannot contact DAS Registy when running on Java 8</li>
+ <li>
+ <!-- [<a href='http://issues.jalview.org/browse/JAL-1273'>JAL-1273</a>] -->
+ 'Superpose with' submenu not shown when new view created
+ </li>
- </ul> <em>Applet</em>
+ </ul> <!-- <em>Applet</em>
<ul>
</ul> <em>General</em>
- <ul>
- </ul> <em>Deployment and Documentation</em>
+ <ul>
+ </ul>--> <em>Deployment and Documentation</em>
<ul>
<li>2G and 1G options in launchApp have no effect on memory
allocation</li>
<li>launchApp service doesn't automatically open
www.jalview.org/examples/exampleFile.jar if no file is given</li>
- </ul>
- <em>Application Known issues</em>
+ <li>
+ <!-- [<a href='http://issues.jalview.org/browse/JAL-1511'>JAL-1511</a>] -->
+ InstallAnywhere reports cannot find valid JVM when Java 1.7_055 is
+ available
+ </li>
+ </ul> <em>Application Known issues</em>
<ul>
<li>
<!-- [<a href='http://issues.jalview.org/browse/JAL-830'>JAL-830</a>] -->
to right
</li>
<li>
- <!-- [<a href='http://issues.jalview.org/browse/JAL-1273'>JAL-1273</a>] -->
- 'Superpose with' submenu not shown when new view created
- </li>
- <li>
<!-- [<a href='http://issues.jalview.org/browse/JAL-1329'>JAL-1329</a>] -->
retrieval fails but progress bar continues for DAS retrieval with
large number of ID
structure tracks are rearranged
</li>
<li>
- <!-- [<a href='http://issues.jalview.org/browse/JAL-1511'>JAL-1511</a>] -->
- InstallAnywhere reports cannot find valid JVM when Java 1.7_055 is
- available
+ <!-- [<a href='http://issues.jalview.org/browse/JAL-1591'>JAL-1591</a>] -->
+ invalid rna structure positional highlighting does not highlight
+ position of invalid base pairs
</li>
<li>
- <!-- [<a href='http://issues.jalview.org/browse/JAL-1591'>JAL-1591</a>] -->
- invalid rna structure positional highlighting isn't useful
+ <!-- <a href='http://issues.jalview.org/browse/JAL-1539'>JAL-1539</a>] -->
+ out of memory errors are not raised when saving jalview project
+ from alignment window file menu
+ </li>
+ <li>
+ <!-- [<a href='http://issues.jalview.org/browse/JAL-1576'>JAL-1576</a>] -->
+ Switching to RNA Helices colouring doesn't propagate to
+ structures
+ </li>
+ <li>
+ <!-- [<a href='http://issues.jalview.org/browse/JAL-1577'>JAL-1577</a>] -->
+ colour by RNA Helices not enabled when user created annotation
+ added to alignment
+ </li>
+ <li>
+ <!-- [<a href='http://issues.jalview.org/browse/JAL-1439'>JAL-1439</a>] -->
+ Jalview icon not shown on dock in Mountain Lion/Webstart
+ </li>
+ </ul> <em>Applet Known Issues</em>
+ <ul>
+ <li>
+ <!-- [<a href='http://issues.jalview.org/browse/JAL-1394'>JAL-1394</a>] -->
+ JalviewLite needs JmolApplet and VARNA-3.91 jar dependencies
+ </li>
+ <li>
+ <!-- [<a href='http://issues.jalview.org/browse/JAL-1510'>JAL-1510</a>] -->
+ Jalview and Jmol example not compatible with IE9
</li>
-</ul>
-<ul>
- <li>
- <!-- <a href='http://issues.jalview.org/browse/JAL-1539'>JAL-1539</a>] -->
- out of memory errors are not raised when saving jalview project
- from alignment window file menu
- </li>
- <li>
- <!-- [<a href='http://issues.jalview.org/browse/JAL-1576'>JAL-1576</a>] -->
- Switching to RNA Helices colouring doesn't propagate to
- structures
- </li>
- <li>
- <!-- [<a href='http://issues.jalview.org/browse/JAL-1577'>JAL-1577</a>] -->
- colour by RNA Helices not enabled when user created annotation
- added to alignment
- </li> TOFIX
- <li>
- <!-- [<a href='http://issues.jalview.org/browse/JAL-1439'>JAL-1439</a>] -->
- Jalview icon not shown on dock in Mountain Lion/Webstart
- </li>
- </ul>
- <em>Applet Known Issues</em>
- <ul>
- <li>
- <!-- [<a href='http://issues.jalview.org/browse/JAL-1394'>JAL-1394</a>] -->
- JalviewLite needs JmolApplet and JmolData jar dependencies
- </li>
- <li>
- <!-- [<a href='http://issues.jalview.org/browse/JAL-1510'>JAL-1510</a>] -->
- Jalview and Jmol example not compatible with IE9
- </li>
- <li>Sort by annotation score doesn't reverse order when
- selected</li>
- </ul>
- </td>
+ <li>Sort by annotation score doesn't reverse order when
+ selected</li>
+ </ul>
+ </td>
</tr>
<tr>
<td><div align="center">
git://source.jalview.org / jalview.git / blobdiff