JAL-3091 release notes and whats new !

[jalview.git] / help / html / releases.html

diff --git a/help/html/releases.html b/help/html/releases.html
index 3b5c702..3812056 100755 (executable)
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -76,27 +76,69 @@ li:before {
     <td><div align="left">
         <em></em>
         <ul>
-        </ul>
-      </div></td>
+            <li>
+              <!-- JAL-247 -->Hidden sequence markers and representative
+              sequence bolding included when exporting alignment as EPS,
+              SVG, PNG or HTML. <em>Display is configured via the
+                Format menu, or for command-line use via a jalview
+                properties file.</em>
+            </li>
+            <li>
+              <!-- JAL-3076 -->Ensembl client updated to Version 7 REST
+              API and sequence data now imported as JSON
+            </li>
+            <li>
+              <!-- JAL-3065 -->Change in recommended way of starting
+              Jalview via a Java command line: add jars in lib directory
+              to CLASSPATH, rather than via the deprecated java.ext.dirs
+              property.
+            </li>
+          </ul>
+          <em>Development</em>
+          <ul>
+            <li>
+              <!-- JAL-3047 -->Support added to execute test suite
+              instrumented with <a href="http://openclover.org/">Open
+                Clover</a>
+            </li>
+          </ul>
+        </div></td>
     <td><div align="left">
         <em></em>
         <ul>
-          <li>
-            <!-- JAL-247 -->Hidden sequence markers and representative
-            sequence bolding included when exporting alignment as EPS,
-            SVG, PNG or HTML. <em>Display of these can be
-              configured via the Format menu or in batch mode with a
-              jalview properties file.</em>
-          </li>
-          <li>
-            <!-- JAL-3003 -->Alignment is black in exported EPS file
-            when sequences are selected in exported view.</em>
-          </li>
-          <li>
-            <!-- JAL-3059 -->Groups with different coloured borders
-            aren't rendered with correct colour.
-          </li>
-        </ul>
+            <li>
+              <!-- JAL-3087 -->Corrupted display when switching to
+              wrapped mode when sequence panel's vertical scrollbar is
+              visible.
+            </li>
+            <li>
+              <!-- JAL-3003 -->Alignment is black in exported EPS file
+              when sequences are selected in exported view.</em>
+            </li>
+            <li>
+              <!-- JAL-3059 -->Groups with different coloured borders
+              aren't rendered with correct colour.
+            </li>
+            <li>
+              <!-- JAL-3092 -->Jalview could hang when importing certain
+              types of knotted RNA secondary structure
+            </li>
+            <li>
+              <!-- JAL-3095 -->Sequence highlight and selection in
+              trimmed VARNA 2D structure is incorrect for sequences that
+              do not start at 1
+            </li>
+            <li>
+              <!-- JAL-3061 -->'.' inserted into RNA secondary structure
+              annotation when columns are inserted into an alignment,
+              and when exporting as Stockolm flatfile.
+            </li>
+            <li>
+              <!-- JAL-3053 -->Jalview annotation rows containing upper
+              and lower-case 'E' and 'H' do not automatically get
+              treated as RNA secondary structure
+            </li>
+          </ul>
       </div>
     </td>
     </tr>