JAL-3091 release notes for JAL-3104

[jalview.git] / help / html / releases.html

diff --git a/help/html/releases.html b/help/html/releases.html
index 75c8e06..a861901 100755 (executable)
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -68,6 +68,102 @@ li:before {
       </td>
     </tr>
     <tr>
+    <td width="60" nowrap>
+      <div align="center">
+        <strong><a name="Jalview.2.10.5">2.10.5</a><br /> <em>6/09/2018</em></strong>
+      </div>
+    </td>
+    <td><div align="left">
+        <em></em>
+        <ul>
+            <li>
+              <!-- JAL-3101 -->Default memory for Jalview webstart and
+              InstallAnywhere increased to 1G.
+            </li>
+            <li>
+              <!-- JAL-247 -->Hidden sequence markers and representative
+              sequence bolding included when exporting alignment as EPS,
+              SVG, PNG or HTML. <em>Display is configured via the
+                Format menu, or for command-line use via a jalview
+                properties file.</em>
+            </li>
+            <li>
+              <!-- JAL-3076 -->Ensembl client updated to Version 7 REST
+              API and sequence data now imported as JSON.
+            </li>
+            <li>
+              <!-- JAL-3065 -->Change in recommended way of starting
+              Jalview via a Java command line: add jars in lib directory
+              to CLASSPATH, rather than via the deprecated java.ext.dirs
+              property.
+            </li>
+          </ul>
+          <em>Development</em>
+          <ul>
+            <li>
+              <!-- JAL-3047 -->Support added to execute test suite
+              instrumented with <a href="http://openclover.org/">Open
+                Clover</a>
+            </li>
+          </ul>
+        </div></td>
+    <td><div align="left">
+        <em></em>
+        <ul>
+            <li>
+              <!-- JAL-3104 -->Poorly scaled bar in quality annotation
+              row shown in Feredoxin Structure alignment view of example
+              alignment.
+            </li>
+            <li>
+              <!-- JAL-2854 -->Annotation obscures sequences if lots of
+              annotation displayed.
+            </li>
+            <li>
+              <!-- JAL-3087 -->Corrupted display when switching to
+              wrapped mode when sequence panel's vertical scrollbar is
+              visible.
+            </li>
+            <li>
+              <!-- JAL-3003 -->Alignment is black in exported EPS file
+              when sequences are selected in exported view.</em>
+            </li>
+            <li>
+              <!-- JAL-3059 -->Groups with different coloured borders
+              aren't rendered with correct colour.
+            </li>
+            <li>
+              <!-- JAL-3092 -->Jalview could hang when importing certain
+              types of knotted RNA secondary structure.
+            </li>
+            <li>
+              <!-- JAL-3095 -->Sequence highlight and selection in
+              trimmed VARNA 2D structure is incorrect for sequences that
+              do not start at 1.
+            </li>
+            <li>
+              <!-- JAL-3061 -->'.' inserted into RNA secondary structure
+              annotation when columns are inserted into an alignment,
+              and when exporting as Stockholm flatfile.
+            </li>
+            <li>
+              <!-- JAL-3053 -->Jalview annotation rows containing upper
+              and lower-case 'E' and 'H' do not automatically get
+              treated as RNA secondary structure.
+            </li>
+          </ul>
+          <em>Java 10 Issues</em>
+          <ul>
+            <li>
+              <!-- JAL-2988 -->OSX - Can't save new files via the File
+              or export menus by typing in a name into the Save dialog
+              box.
+            </li>
+          </ul>
+      </div>
+    </td>
+    </tr>
+    <tr>
       <td width="60" nowrap>
         <div align="center">
           <strong><a name="Jalview.2.10.4b1">2.10.4b1</a><br />
@@ -111,7 +207,8 @@ li:before {
               annotation added to view (Windows)
             </li>
             <li>
-              <!-- JAL-3009 -->Jalview Desktop is slow to start up when network connectivity is poor
+              <!-- JAL-3009 -->Jalview Desktop is slow to start up when
+              network connectivity is poor
             </li>
             <li>
               <!-- JAL-1460 -->Drag URL from chrome, firefox, IE to