Merge branch 'documentation/JAL-2418_release2102' into develop

[jalview.git] / help / html / whatsNew.html

diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index 8a0436d..60769a4 100755 (executable)
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -32,15 +32,16 @@
     highlights are below.
   </p>
   <ul>
-    <li><strong>New UI, and faster and more configurable implementation for PCA, Neighbour-Joining and UPGMA Trees</strong><br>
+    <li><strong>New UI, and faster and more configurable
+        implementation for PCA, Neighbour-Joining and UPGMA Trees</strong><br>
       Menu entries for calculating PCA and different types of tree have
       been replaced by a single <em>Calculations</em> dialog box. The
-      underlying implementation for the PCA and tree calculations have been
-      made faster and more memory efficient. A new framework has also been
-      created for the score models used to calculate distances between
-      sequences. This framework allows import of substitution matrices in
-      NCBI and AAIndex format, and custom score models to be created via a
-      groovy script.</li>
+      underlying implementation for the PCA and tree calculations have
+      been made faster and more memory efficient. A new framework has
+      also been created for the score models used to calculate distances
+      between sequences. This framework allows import of substitution
+      matrices in NCBI and AAIndex format, and custom score models to be
+      created via a groovy script.</li>
     <li><strong>Update to JABAWS 2.2</strong><br />Jalview's
       alignment, protein conservation analysis, and protein disorder and
       RNA secondary structure prediction services are now provided by <a
@@ -64,6 +65,9 @@
           (just select the region containing insertions to remove)
           without affecting the rest of the hidden columns.</li>
       </ul></li>
+    <li>Recent search histories for <a
+      href="features/search.html#queryhistory">Find</a> and the free
+      text search system (for querying Uniprot and the PDBe).</li>
   </ul>
   <p>
     <strong><a name="experimental">Experimental Features</a></strong>
@@ -80,5 +84,16 @@
         the Chimera viewer's Chimera menu</a> allow positional annotation to
       be exchanged between Chimera and Jalview.</li>
   </ul>
+  <p>
+    <strong>Scripting</strong><br />New <a
+      href="http://www.jalview.org/examples/groovy">groovy examples</a>
+    demonstrate Jalview 2.10.2 APIs for creation of data-driven
+    colourschemes, and custom alignment file handlers. The <a
+      href="groovy/featuresCounter.html">FeatureAnnotationWorker</a>
+    introduced in Jalview 2.10 has also been refactored to allow
+    efficient counting across multiple feature types. Please be aware
+    that feature counter scripts created for earlier versions will not
+    execute in Jalview 2.10.2.
+  </p>
 </body>
 </html>