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- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
<strong>What's new ?</strong>
</p>
<p>
- Jalview 2.9 has been in development since December 2014. In addition
- to a multitude of bug fixes and minor improvements (both small, and
+ Jalview 2.9.0b2 is a bug fix release for Jalview 2.9.
+ The release of Jalview 2.9 in September 2015 included
+ a multitude of bug fixes and minor improvements (both small, and
rather big!), it also brings major new capabilities for codon-level
analysis of protein alignments and the retrieval and manipulation of
- structural data.</p><p>For the full list of changes, see the
- <a href="releases.html#Jalview.2.9">Jalview 2.9 Release Notes</a>.
+ structural data.</p><p>For the patches since version 2.9 was released, see the
+ <a href="releases.html#Jalview.2.9.0b2">Jalview 2.9.0b2 Release Notes</a>.
</p>
<p>
<strong>Highlights in Jalview 2.9</strong>
criteria.</li>
<li><strong>Improved support for RNA visualisation</strong><br />Jalview
2.9 integrates the latest version of the <a
- href="http://varna.lri.fr">VARNA RNA Viewer</a>, and VARNA views
+ href="features/varna.html">VARNA RNA Viewer</a>, and VARNA views
can also now be stored in Jalview projects. We've also dealt with
a number of lingering bugs in the VARNA/Jalview interface,
including the loss of pseudoknots when RNA secondary structure is