JAL-4004 existing releases-VERSION.md files and releases.html template

[jalview.git] / help / markdown / releases / release-2_10_0b1.md

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+---
+channel: release
+version: 2.10.0b1
+date: 2016-10-25
+---
+
+## New Features
+
+
+
+### Application
+- 3D Structure chooser opens with 'Cached structures' view if structures already loaded
+- Progress bar reports models as they are loaded to structure views
+
+
+## Issues Resolved
+
+
+
+### General
+  - Colour by conservation always enabled and no tick shown in menu when BLOSUM or PID shading applied
+  - FER1_ARATH and FER2_ARATH labels were switched in example sequences/projects/trees
+
+
+### Application
+  - Jalview projects with views of local PDB structure files saved on Windows cannot be opened on OSX
+  - Multiple structure views can be opened and superposed without timeout for structures with multiple models or multiple sequences in alignment
+  - Cannot import or associated local PDB files without a PDB ID HEADER line
+  - RMSD is not output in Jmol console when superposition is performed
+  - Drag and drop of URL from Browser fails for Linux and OSX versions earlier than El Capitan
+  - ENA client ignores invalid content from ENA server
+  - Exceptions are not raised in console when ENA client attempts to fetch non-existent IDs via Fetch DB Refs UI option
+  - Exceptions are not raised in console when a new view is created on the alignment
+  - OSX right-click fixed for group selections: CMD-click to insert/remove gaps in groups and CTRL-click to open group pop-up menu
+
+
+### Build and deployment
+  - URL link checker now copes with multi-line anchor tags
+
+
+### New Known Issues
+  - Drag and drop from URL links in browsers do not work on Windows