JAL-4004 existing releases-VERSION.md files and releases.html template

[jalview.git] / help / markdown / releases / release-2_11_1_3.md

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+---
+channel: release
+version: 2.11.1.3
+date: 2020-10-29
+---
+
+## Issues Resolved
+
+- <!-- JAL-3765 -->  Find doesn't always highlight all matching positions in a sequence (bug introduced in 2.11.1.2)
+- <!-- JAL-3760 -->  Alignments containing one or more protein sequences can be classed as nucleotide
+- <!-- JAL-3748 -->  CDS alignment doesn't match original CDS sequences after alignment of protein products (known defect first reported for 2.11.1.0)
+- <!-- JAL-3725 -->  No tooltip or popup menu for genomic features outwith CDS shown overlaid on protein
+- <!-- JAL-3751 -->  Overlapping CDS in ENA accessions are not correctly mapped by Jalview (e.g. affects viral CDS with ribosomal slippage, since 2.9.0)
+- <!-- JAL-3763 -->  Spliced transcript CDS sequences don't show CDS features
+- <!-- JAL-3700 -->  Selections in CDS sequence panel don't always select corresponding protein sequences
+- <!-- JAL-3759 -->   *Make groups from selection* for a column selection doesn't always ignore hidden columns
+
+
+### Installer
+- <!-- JAL-3611 -->  Space character in Jalview install path on Windows prevents install4j launching getdown
+
+
+### Development
+- <!-- JAL-3248 -->  Fixed typos and specified compatible gradle version numbers in doc/building.md