JAL-4090 fix up release notes and what’s new (inc removing 2.11.2 cruft from template)

[jalview.git] / help / templates / whatsNew.html

diff --git a/help/templates/whatsNew.html b/help/templates/whatsNew.html
index 70deea4..301ea4b 100755 (executable)
--- a/help/templates/whatsNew.html
+++ b/help/templates/whatsNew.html
@@ -27,69 +27,5 @@
     <strong>Welcome to Jalview Version __VERSION__ (released __DISPLAY_DATE__)!!</strong><br/>
   </p>
 __WHATS_NEW__
-  <p>
-    The 2.11.2 release series provides support for two popular 3D
-    structure visualisation tools, new features for discovery of 3D
-    structures, improved platform integration and a new command line
-    tool allowing Jalview to be more easily called from scripts.</p>
-
-  <p>
-    <strong>View predicted protein structures via 3D-Beacons</strong> <br>
-    Jalview 2.11.2's <a href="features/structurechooser.html">Structure
-      Chooser includes a client for the 3D-Beacons Network</a>. Launched in
-    2021, the 3D-Beacons network (<a
-      href="https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/">www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/</a>)
-    provides a central point for the retrieval of predicted and observed
-    3D structures for sequences in Uniprot, including homology models
-    from Swiss-model and deep learning based predictions from the EBI's
-    Alphafold database (Orengo et al. 2020, <a
-      href="https://doi.org/10.12688/f1000research.20559.1">doi:10.12688/f1000research.20559.1</a>).<br>
-  </p>
-
-  <p>
-    <strong>Support for viewing structures with ChimeraX and
-      Pymol</strong><br> Jalview's 3D structure viewer system has been
-    re-architected to allow easier integration of external structure
-    viewers, and takes advantage of the strucViz2 Chimera communications
-    library developed by Scooter Morris (<a
-      href="https://doi.org/10.1093/bioinformatics/btm329">doi:10.1093/bioinformatics/btm329</a>).<br /> <br />
-    The <a href="features/preferences.html#structure">Structures
-      Preferences tab</a> provides new options allowing ChimeraX and
-    Pymol to be used for visualising external 3D structures. Views
-    from all structure viewers are saved in Jalview Projects, allowing
-    them to be shared with others using Jalview 2.11.2 or later,
-    providing they have the same viewer installed and configured to be
-    used with Jalview.<br/><br/>Jalview
-    2.11.2 has been tested with <strong>Pymol 2.5.0 (community)</strong> and <strong>2.5.2
-    (incentive)</strong>. For <strong>ChimeraX, we recommend using v1.3 or later</strong>.
-  </p>
-  <p>Other highlights include:</p>
-  <ul>
-    <li>Import of annotated DNA and RNA loci via GenBank and EMBL
-      style flatfile</li>
-    <li><strong>Easier configuration of <a
-        href="features/preferences.html#startup">Jalview's memory
-          allocation</a></strong></li>
-    <li>Scripts for <a href="features/commandline.html">running
-        Jalview via the command line</a> on macOS, Linux/Unix and Windows.
-    </li>
-  </ul>
-
-
-  <p>
-      For the full details, see <a
-        href="releases.html#Jalview.2.11.2">the Jalview 2.11.2 series
-        release notes</a>.
-    </p>
-  <p>
-    <strong>Known Issues</strong> <br />The following known issues will
-    be addressed in a minor patch release.
-  
-  <ul>
-    <li>Display of RESNUM sequence features are not suppressed when
-      structures associated with a sequence are viewed with an external
-      viewer (Regression from 2.11.1 series)</li>
-  </ul>
-    <p></p>
 </body>
 </html>