--- /dev/null
+###############################################################################
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+# Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+#
+# This file is part of Jalview.
+#
+# Jalview is free software: you can redistribute it and/or
+# modify it under the terms of the GNU General Public License
+# as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+#
+# Jalview is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty
+# of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+# PURPOSE. See the GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+###############################################################################
+annotation.processing.enabled=true
+annotation.processing.enabled.in.editor=false
+annotation.processing.run.all.processors=true
+annotation.processing.source.output=${build.generated.sources.dir}/ap-source-output
+application.title=jalview
+application.vendor=Barton Group
+build.classes.dir=${build.dir}/classes
+build.classes.excludes=**/*.java,**/*.form
+# This directory is removed when the project is cleaned:
+build.dir=build
+build.generated.dir=${build.dir}/generated
+build.generated.sources.dir=${build.dir}/generated-sources
+# Only compile against the classpath explicitly listed here:
+build.sysclasspath=ignore
+build.test.classes.dir=${build.dir}/test/classes
+build.test.results.dir=${build.dir}/test/results
+buildfile=nbbuild.xml
+# Uncomment to specify the preferred debugger connection transport:
+#debug.transport=dt_socket
+debug.classpath=\
+ ${run.classpath}
+debug.test.classpath=\
+ ${run.test.classpath}
+# This directory is removed when the project is cleaned:
+dist.dir=dist
+dist.jar=${dist.dir}/jalview.jar
+dist.javadoc.dir=${dist.dir}/javadoc
+endorsed.classpath=
+excludes=
+file.reference.activation.jar=lib/activation.jar
+file.reference.apache-mime4j-0.6.jar=lib/apache-mime4j-0.6.jar
+file.reference.axis.jar=lib/axis.jar
+file.reference.castor-1.1-cycle-xml.jar=lib/castor-1.1-cycle-xml.jar
+file.reference.commons-codec-1.3.jar=lib/commons-codec-1.3.jar
+file.reference.commons-discovery.jar=lib/commons-discovery.jar
+file.reference.commons-logging-1.1.1.jar=lib/commons-logging-1.1.1.jar
+file.reference.commons-logging.jar=lib/commons-logging.jar
+file.reference.httpclient-4.0.3.jar=lib/httpclient-4.0.3.jar
+file.reference.httpcore-4.0.1.jar=lib/httpcore-4.0.1.jar
+file.reference.httpmime-4.0.3.jar=lib/httpmime-4.0.3.jar
+file.reference.jalview-src=src
+file.reference.jaxrpc.jar=lib/jaxrpc.jar
+file.reference.JGoogleAnalytics_0.3.jar=lib/JGoogleAnalytics_0.3.jar
+file.reference.jhall.jar=lib/jhall.jar
+file.reference.Jmol-12.2.4.jar=lib/Jmol-12.2.4.jar
+file.reference.JmolApplet-12.2.4.jar=appletlib/JmolApplet-12.2.4.jar
+file.reference.log4j-1.2.8.jar=lib/log4j-1.2.8.jar
+file.reference.mail.jar=lib/mail.jar
+file.reference.min-jaba-client.jar=lib/min-jaba-client-2.0.jar
+file.reference.regex.jar=lib/regex.jar
+file.reference.saaj.jar=lib/saaj.jar
+file.reference.vamsas-client.jar=lib/vamsas-client.jar
+file.reference.wsdl4j.jar=lib/wsdl4j.jar
+file.reference.xercesImpl.jar=lib/xercesImpl.jar
+file.reference.xml-apis.jar=lib/xml-apis.jar
+file.reference.miglayout-4.0-swing.jar=lib/miglayout-4.0-swing.jar
+file.reference.varna-3.9-dev.jar=lib/VARNAv3.9.jar
+includes=**
+jar.compress=false
+javac.classpath=\
+ ${libs.plugin.jar.classpath}:\
+ ${file.reference.activation.jar}:\
+ ${file.reference.apache-mime4j-0.6.jar}:\
+ ${file.reference.axis.jar}:\
+ ${file.reference.castor-1.1-cycle-xml.jar}:\
+ ${file.reference.commons-codec-1.3.jar}:\
+ ${file.reference.commons-discovery.jar}:\
+ ${file.reference.commons-logging-1.1.1.jar}:\
+ ${file.reference.commons-logging.jar}:\
+ ${file.reference.regex.jar}:\
+ ${file.reference.saaj.jar}:\
+ ${file.reference.httpclient-4.0.3.jar}:\
+ ${file.reference.httpcore-4.0.1.jar}:\
+ ${file.reference.httpmime-4.0.3.jar}:\
+ ${file.reference.jaxrpc.jar}:\
+ ${file.reference.JGoogleAnalytics_0.3.jar}:\
+ ${file.reference.jhall.jar}:\
+ ${file.reference.Jmol-12.2.4.jar}:\
+ ${file.reference.miglayout-4.0-swing.jar}:\
+ ${file.reference.log4j-1.2.8.jar}:\
+ ${file.reference.mail.jar}:\
+ ${file.reference.min-jaba-client.jar}:\
+ ${file.reference.vamsas-client.jar}:\
+ ${file.reference.xml-apis.jar}:\
+ ${file.reference.xercesImpl.jar}:\
+ ${file.reference.wsdl4j.jar}:\
+ ${file.reference.JmolApplet-12.2.4.jar} \
+ ${file.reference.varna-3.9-dev.jar}
+# Space-separated list of extra javac options
+javac.compilerargs=
+javac.deprecation=false
+javac.processorpath=\
+ ${javac.classpath}
+javac.source=1.6
+javac.target=1.6
+javac.test.classpath=\
+ ${javac.classpath}:\
+ ${build.classes.dir}
+javac.test.processorpath=\
+ ${javac.test.classpath}
+javadoc.additionalparam=
+javadoc.author=false
+javadoc.encoding=${source.encoding}
+javadoc.noindex=false
+javadoc.nonavbar=false
+javadoc.notree=false
+javadoc.private=false
+javadoc.splitindex=true
+javadoc.use=true
+javadoc.version=false
+javadoc.windowtitle=
+main.class=jalview.bin.Jalview
+manifest.file=manifest.mf
+meta.inf.dir=${src.dir}/META-INF
+mkdist.disabled=false
+platform.active=default_platform
+run.classpath=\
+ ${javac.classpath}:\
+ ${build.classes.dir}
+# Space-separated list of JVM arguments used when running the project
+# (you may also define separate properties like run-sys-prop.name=value instead of -Dname=value
+# or test-sys-prop.name=value to set system properties for unit tests):
+run.jvmargs=
+run.test.classpath=\
+ ${javac.test.classpath}:\
+ ${build.test.classes.dir}
+source.encoding=UTF-8
+src.dir=${file.reference.jalview-src}
git://source.jalview.org / jalview.git / blobdiff