--- /dev/null
+J2SApplet exec testApplet start applet null
+swingjs.api.Interface creating instance of javajs.util.AjaxURLStreamHandlerFactory
+get parameter: language = null
+get parameter: name = testApplet
+get parameter: syncId = 2491377188955504
+JSApp initialized
+JSAppletViewer initializing2
+JSToolkit initialized
+JSGraphicsConfiguration initialized
+swingjs.api.Interface creating instance of swingjs.JSGraphicsEnvironment
+JSGraphicsEnvironment initialized
+swingjs.api.Interface creating instance of swingjs.JSScreenDevice
+JSScreenDevice initialized
+JSAppletViewer thread run1 mode=0 status=0
+JSAppletViewer thread run1 mode=1 status=1
+JSAppletViewer runloader
+get parameter: main = jalview.bin.Jalview
+swingjs.api.Interface creating instance of swingjs.JSApplet
+swingjs.api.Interface creating instance of swingjs.plaf.HTML5LookAndFeel
+testApplet loaded
+JSAppletViewer thread run1 mode=1 status=76
+testApplet running jalview.bin.Jalview
+Running main(args) in class jalview.bin.Jalview
+Java version: 1.6-1.8
+null Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/71.0.3578.98 Safari/537.36 Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/71.0.3578.98 Safari/537.36
+JSUtil getting Java resource sun/util/resources/CalendarData.properties
+Processing swingjs/j2s/sun/util/resources/CalendarData.properties [1780]
+swingjs.api.Interface creating instance of java.util.PropertyResourceBundle
+JSUtil getting Java resource sun/util/resources/CalendarData_en.properties
+Processing swingjs/j2s/sun/util/resources/CalendarData_en.properties [1937]
+swingjs.api.Interface creating instance of sun.util.calendar.Gregorian
+swingjs.api.Interface creating instance of sun.text.resources.FormatData
+swingjs.api.Interface creating instance of sun.text.resources.FormatData_en
+Loading jalview properties from : https://./.jalview_properties
+Disabling Jalview writing to user's local properties file.
+Jalview Version: Test
+Jalview Debugging Output Follows.
+Getting messages for lang: en_US
+JSUtil getting Java resource lang/Messages.properties
+Processing swingjs/j2s/lang/Messages.properties [82729]
+JSUtil getting Java resource lang/Messages_en.properties
+Processing swingjs/j2s/lang/Messages_en.properties [5]
+JSUtil getting Java resource lang/Messages_en_US.properties
+Processing swingjs/j2s/lang/Messages_en_US.properties [5]
+JSUtil getting Java resource swingjs/jquery/j2sMenu.js
+Processing swingjs/j2s/swingjs/jquery/j2sMenu.js [27197]
+JSWIndowUI ????
+JSFrameViewer creating new canvas testApplet_canvas2: 900 613
+JSWindowUI windowOpened true
+JSFrameUI windowActivated true
+swingjs.api.Interface creating instance of swingjs.JSGraphicsConfiguration
+JSGraphicsConfiguration initialized
+JSPopupMenuUI processing 0 _hide for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 1 _hide for testApplet_PopupMenuUI_46_46
+noclickout 0 1548730342022
+PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
+PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
+click added 0
+JSPopupMenuUI processing 2 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 3 onover3 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 4 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 5 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 6 onover1 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 7 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 8 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 9 onover1 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 10 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 11 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 12 onover1 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 13 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 14 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 15 onover1 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 16 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 17 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 18 onover3 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 19 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 20 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 21 onover3 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 22 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 23 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 24 onover1 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 25 _hide for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 26 _closeSubmenus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 27 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 28 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 29 onover1 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 30 _hide for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 31 _closeSubmenus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 32 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 33 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 34 onover3 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 35 _hide for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 36 _closeSubmenus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 37 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 38 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 39 onover1 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 40 _hide for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 41 _closeSubmenus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 42 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 43 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 44 onover3 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 45 _hide for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 46 _closeSubmenus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 47 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 48 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 49 onover1 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 50 _hide for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 51 _closeSubmenus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 52 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 53 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 54 onover1 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 55 _hide for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 56 _closeSubmenus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 57 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 58 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 59 onover1 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 60 _hide for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 61 _closeSubmenus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 62 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 63 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 64 onover1 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 65 _hide for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 66 _closeSubmenus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 67 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 68 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 69 onover1 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 70 _hide for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 71 _closeSubmenus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 72 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 73 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 74 onover1 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 75 _hide for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 76 _closeSubmenus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 77 blur for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 78 focus for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 79 onover1 for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 80 onpress for testApplet_PopupMenuUI_46_46
+JSUtil getting Java resource swingjs/jquery/jquery-ui-j2sslider.css
+Processing swingjs/j2s/swingjs/jquery/jquery-ui-j2sslider.css [24188]
+JSUtil getting Java resource swingjs/jquery/jquery-ui-j2sslider.js
+Processing swingjs/j2s/swingjs/jquery/jquery-ui-j2sslider.js [22356]
+JSDesktopIconUI SURRAGATE -- NOT IMPLEMENTED YET!
+JSWIndowUI ????
+collapseAll 0
+JSPopupMenuUI processing 81 collapseAll for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 82 select for testApplet_PopupMenuUI_46_46
+collapseAll 0
+JSPopupMenuUI processing 83 collapseAll for testApplet_PopupMenuUI_46_46
+JSPopupMenuUI processing 84 onclick for testApplet_PopupMenuUI_46_46
+click removed 0
+JSFrameViewer creating new canvas testApplet_canvas3: 400 230
+JSWindowUI windowOpened true
+click removed 0
+JSFrameUI windowActivated true
+PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
+PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
+PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
+PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
+Platform: timer mark 0.0 0.0 Desktop Fetching 1 sequence queries from ENSEMBL
+Platform: timer mark 0.708 0.676 EnsembleRestClient.getJSON https://rest.ensembl.org/lookup/id/ENSG00000157764?content-type=application/json
+Platform: timer mark 0.861 0.145 EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
+Platform: timer mark 0.997 0.135 EnsembleRestClient.getJSON https://rest.ensembl.org/info/rest?content-type=application/json
+EnsemblRestClient expected ENSEMBL REST version 7.0 but found 9.0, see https://github.com/Ensembl/ensembl-rest/wiki/Change-log
+Platform: timer mark 1.151 0.136 EnsembleRestClient.getJSON https://rest.ensembl.org/info/data?content-type=application/json
+Platform: timer mark 1.153 0.002 EnsemblSeqProx.fetchSeq
+Platform: timer mark 1.153 0.0 ENS seqproxy
+Platform: timer mark 2.374 1.22 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENSG00000157764?type=genomic&Accept=application/json&content-type=application/json&object_type=Gene
+Platform: timer mark 2.468 0.094 ENS seqproxy2
+Platform: timer mark 2.564 0.096 ESP.getsequencerec1
+Platform: timer mark 14.377 11.8 EnsembleRestClient.getJSON https://rest.ensembl.org/overlap/id/ENSG00000157764?content-type=application/json&object_type=Gene&feature=gene&feature=transcript&feature=exon&feature=cds&feature=variation
+Platform: timer mark 19.553 5.176 ESP.getsequencerec2
+Platform: timer mark 19.579 0.026 ESP. xfer 46594
+Platform: timer mark 25.302 5.723 ESP.transferFeatures
+Platform: timer mark 25.302 0.0 ESP.addfeat done
+Platform: timer mark 25.303 0.001 ESP. getdataseq
+Platform: timer mark 25.303 0.0 ESP. getxref
+Platform: timer mark 26.69 1.382 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSG00000157764?content-type=application/json&all_levels=1
+Platform: timer mark 26.712 0.022 ESP. seqprox done
+Platform: timer mark 26.862 0.148 EnsembleRestClient.getJSON https://rest.ensembl.org/lookup/id/ENSG00000157764?content-type=application/json&object_type=Gene
+Platform: timer mark 27.648 0.786 ESP. getdataseq
+Platform: timer mark 27.65 0.002 ESP. getxref
+Platform: timer mark 28.252 0.602 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646891?content-type=application/json&all_levels=1
+Platform: timer mark 28.257 0.005 ESP. seqprox done
+Adding protein product for ENST00000646891
+Platform: timer mark 28.541 0.279 EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
+Platform: timer mark 28.541 0.0 EnsemblSeqProx.fetchSeq
+Platform: timer mark 28.542 0.001 ENS seqproxy
+Platform: timer mark 28.726 0.183 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646891?type=protein&Accept=application/json&content-type=application/json
+Platform: timer mark 28.727 0.001 ENS seqproxy2
+Platform: timer mark 28.728 0.001 ESP. getdataseq
+Platform: timer mark 28.729 0.001 ESP. getxref
+Platform: timer mark 29.058 0.327 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000493543?content-type=application/json&all_levels=1
+Platform: timer mark 29.061 0.003 ESP. seqprox done
+Platform: timer mark 29.742 0.681 ESP. getdataseq
+Platform: timer mark 29.742 0.0 ESP. getxref
+Platform: timer mark 30.018 0.275 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000496384?content-type=application/json&all_levels=1
+Platform: timer mark 30.019 0.001 ESP. seqprox done
+Adding protein product for ENST00000496384
+Platform: timer mark 30.02 0.001 EnsemblSeqProx.fetchSeq
+Platform: timer mark 30.02 0.0 ENS seqproxy
+Platform: timer mark 30.199 0.178 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000496384?type=protein&Accept=application/json&content-type=application/json
+Platform: timer mark 30.2 0.001 ENS seqproxy2
+Platform: timer mark 30.201 0.001 ESP. getdataseq
+Platform: timer mark 30.201 0.0 ESP. getxref
+Platform: timer mark 30.362 0.16 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000419060?content-type=application/json&all_levels=1
+Platform: timer mark 30.364 0.002 ESP. seqprox done
+Platform: timer mark 30.807 0.443 ESP. getdataseq
+Platform: timer mark 30.808 0.001 ESP. getxref
+Platform: timer mark 30.982 0.174 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000469930?content-type=application/json&all_levels=1
+Platform: timer mark 30.983 0.001 ESP. seqprox done
+Adding protein product for ENST00000469930
+Platform: timer mark 30.984 0.001 EnsemblSeqProx.fetchSeq
+Platform: timer mark 30.985 0.001 ENS seqproxy
+Platform: timer mark 31.148 0.163 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000469930?type=protein&Accept=application/json&content-type=application/json
+Platform: timer mark 31.149 0.001 ENS seqproxy2
+Platform: timer mark 31.149 0.0 ESP. getdataseq
+Platform: timer mark 31.15 0.001 ESP. getxref
+Platform: timer mark 31.297 0.146 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000495858?content-type=application/json&all_levels=1
+Platform: timer mark 31.299 0.002 ESP. seqprox done
+Platform: timer mark 31.777 0.478 ESP. getdataseq
+Platform: timer mark 31.777 0.0 ESP. getxref
+Platform: timer mark 31.959 0.181 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000288602?content-type=application/json&all_levels=1
+Platform: timer mark 31.961 0.002 ESP. seqprox done
+Adding protein product for ENST00000288602
+Platform: timer mark 31.961 0.0 EnsemblSeqProx.fetchSeq
+Platform: timer mark 31.962 0.001 ENS seqproxy
+Platform: timer mark 32.171 0.208 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000288602?type=protein&Accept=application/json&content-type=application/json
+Platform: timer mark 32.173 0.002 ENS seqproxy2
+Platform: timer mark 32.173 0.0 ESP. getdataseq
+Platform: timer mark 32.175 0.002 ESP. getxref
+Platform: timer mark 32.324 0.149 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000288602?content-type=application/json&all_levels=1
+Platform: timer mark 32.326 0.002 ESP. seqprox done
+Platform: timer mark 32.775 0.449 ESP. getdataseq
+Platform: timer mark 32.775 0.0 ESP. getxref
+Platform: timer mark 32.929 0.152 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642272?content-type=application/json&all_levels=1
+Platform: timer mark 32.93 0.001 ESP. seqprox done
+Adding protein product for ENST00000642272
+Platform: timer mark 32.932 0.002 EnsemblSeqProx.fetchSeq
+Platform: timer mark 32.932 0.0 ENS seqproxy
+Response code 400
+Platform: timer mark 33.086 0.153 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642272?type=protein&Accept=application/json&content-type=application/json
+No protein product found for ENST00000642272
+Platform: timer mark 33.48 0.394 ESP. getdataseq
+Platform: timer mark 33.481 0.001 ESP. getxref
+Platform: timer mark 33.883 0.402 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000643790?content-type=application/json&all_levels=1
+Platform: timer mark 33.884 0.001 ESP. seqprox done
+Adding protein product for ENST00000643790
+Platform: timer mark 33.885 0.001 EnsemblSeqProx.fetchSeq
+Platform: timer mark 33.885 0.0 ENS seqproxy
+Response code 400
+Platform: timer mark 34.069 0.183 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000643790?type=protein&Accept=application/json&content-type=application/json
+No protein product found for ENST00000643790
+Platform: timer mark 34.476 0.407 ESP. getdataseq
+Platform: timer mark 34.478 0.002 ESP. getxref
+Platform: timer mark 34.866 0.388 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646427?content-type=application/json&all_levels=1
+Platform: timer mark 34.867 0.001 ESP. seqprox done
+Adding protein product for ENST00000646427
+Platform: timer mark 34.869 0.002 EnsemblSeqProx.fetchSeq
+Platform: timer mark 34.869 0.0 ENS seqproxy
+Response code 400
+Platform: timer mark 35.056 0.186 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646427?type=protein&Accept=application/json&content-type=application/json
+No protein product found for ENST00000646427
+Platform: timer mark 35.448 0.392 ESP. getdataseq
+Platform: timer mark 35.449 0.001 ESP. getxref
+Platform: timer mark 35.836 0.386 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642808?content-type=application/json&all_levels=1
+Platform: timer mark 35.836 0.0 ESP. seqprox done
+Adding protein product for ENST00000642808
+Platform: timer mark 35.838 0.002 EnsemblSeqProx.fetchSeq
+Platform: timer mark 35.838 0.0 ENS seqproxy
+Response code 400
+Platform: timer mark 35.986 0.147 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642808?type=protein&Accept=application/json&content-type=application/json
+No protein product found for ENST00000642808
+Platform: timer mark 36.376 0.39 ESP. getdataseq
+Platform: timer mark 36.377 0.001 ESP. getxref
+Platform: timer mark 36.76 0.383 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000643356?content-type=application/json&all_levels=1
+Platform: timer mark 36.761 0.001 ESP. seqprox done
+Adding protein product for ENST00000643356
+Platform: timer mark 36.762 0.001 EnsemblSeqProx.fetchSeq
+Platform: timer mark 36.763 0.001 ENS seqproxy
+Response code 400
+Platform: timer mark 36.931 0.167 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000643356?type=protein&Accept=application/json&content-type=application/json
+No protein product found for ENST00000643356
+Platform: timer mark 37.389 0.458 ESP. getdataseq
+Platform: timer mark 37.39 0.001 ESP. getxref
+Platform: timer mark 37.783 0.393 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000497784?content-type=application/json&all_levels=1
+Platform: timer mark 37.785 0.002 ESP. seqprox done
+Adding protein product for ENST00000497784
+Platform: timer mark 37.786 0.001 EnsemblSeqProx.fetchSeq
+Platform: timer mark 37.787 0.001 ENS seqproxy
+Platform: timer mark 37.963 0.175 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000497784?type=protein&Accept=application/json&content-type=application/json
+Platform: timer mark 37.965 0.002 ENS seqproxy2
+Platform: timer mark 37.966 0.001 ESP. getdataseq
+Platform: timer mark 37.966 0.0 ESP. getxref
+Platform: timer mark 38.133 0.166 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000420119?content-type=application/json&all_levels=1
+Platform: timer mark 38.134 0.001 ESP. seqprox done
+Platform: timer mark 38.548 0.414 ESP. getdataseq
+Platform: timer mark 38.549 0.001 ESP. getxref
+Platform: timer mark 38.688 0.138 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646334?content-type=application/json&all_levels=1
+Platform: timer mark 38.689 0.001 ESP. seqprox done
+Adding protein product for ENST00000646334
+Platform: timer mark 38.829 0.139 EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
+Platform: timer mark 38.83 0.001 EnsemblSeqProx.fetchSeq
+Platform: timer mark 38.831 0.001 ENS seqproxy
+Response code 400
+Platform: timer mark 39.007 0.175 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646334?type=protein&Accept=application/json&content-type=application/json
+No protein product found for ENST00000646334
+Platform: timer mark 39.468 0.461 ESP. getdataseq
+Platform: timer mark 39.469 0.001 ESP. getxref
+Platform: timer mark 39.876 0.406 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646730?content-type=application/json&all_levels=1
+Platform: timer mark 39.877 0.001 ESP. seqprox done
+Adding protein product for ENST00000646730
+Platform: timer mark 39.878 0.001 EnsemblSeqProx.fetchSeq
+Platform: timer mark 39.879 0.001 ENS seqproxy
+Platform: timer mark 40.062 0.182 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646730?type=protein&Accept=application/json&content-type=application/json
+Platform: timer mark 40.063 0.001 ENS seqproxy2
+Platform: timer mark 40.064 0.001 ESP. getdataseq
+Platform: timer mark 40.065 0.001 ESP. getxref
+Platform: timer mark 40.233 0.167 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000494784?content-type=application/json&all_levels=1
+Platform: timer mark 40.234 0.001 ESP. seqprox done
+Platform: timer mark 40.685 0.451 ESP. getdataseq
+Platform: timer mark 40.686 0.001 ESP. getxref
+Platform: timer mark 40.861 0.174 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644650?content-type=application/json&all_levels=1
+Platform: timer mark 40.862 0.001 ESP. seqprox done
+Adding protein product for ENST00000644650
+Platform: timer mark 40.864 0.002 EnsemblSeqProx.fetchSeq
+Platform: timer mark 40.865 0.001 ENS seqproxy
+Platform: timer mark 41.022 0.156 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644650?type=protein&Accept=application/json&content-type=application/json
+Platform: timer mark 41.024 0.002 ENS seqproxy2
+Platform: timer mark 41.025 0.001 ESP. getdataseq
+Platform: timer mark 41.025 0.0 ESP. getxref
+Platform: timer mark 41.288 0.262 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000493783?content-type=application/json&all_levels=1
+Platform: timer mark 41.29 0.002 ESP. seqprox done
+Error retrieving protein for ENST00000644650: Index: -1, Size: 1
+Platform: timer mark 41.854 0.564 ESP. getdataseq
+Platform: timer mark 41.855 0.001 ESP. getxref
+Platform: timer mark 42.028 0.172 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000647434?content-type=application/json&all_levels=1
+Platform: timer mark 42.03 0.002 ESP. seqprox done
+Adding protein product for ENST00000647434
+Platform: timer mark 42.032 0.002 EnsemblSeqProx.fetchSeq
+Platform: timer mark 42.033 0.001 ENS seqproxy
+Platform: timer mark 42.214 0.18 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000647434?type=protein&Accept=application/json&content-type=application/json
+Platform: timer mark 42.215 0.001 ENS seqproxy2
+Platform: timer mark 42.216 0.001 ESP. getdataseq
+Platform: timer mark 42.218 0.002 ESP. getxref
+Platform: timer mark 42.386 0.168 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000495132?content-type=application/json&all_levels=1
+Platform: timer mark 42.387 0.001 ESP. seqprox done
+Platform: timer mark 43.127 0.74 ESP. getdataseq
+Platform: timer mark 43.128 0.001 ESP. getxref
+Platform: timer mark 43.301 0.172 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000479537?content-type=application/json&all_levels=1
+Platform: timer mark 43.302 0.001 ESP. seqprox done
+Adding protein product for ENST00000479537
+Platform: timer mark 43.305 0.003 EnsemblSeqProx.fetchSeq
+Platform: timer mark 43.305 0.0 ENS seqproxy
+Platform: timer mark 43.517 0.211 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000479537?type=protein&Accept=application/json&content-type=application/json
+Platform: timer mark 43.518 0.001 ENS seqproxy2
+Platform: timer mark 43.52 0.002 ESP. getdataseq
+Platform: timer mark 43.521 0.001 ESP. getxref
+Platform: timer mark 43.682 0.161 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000418033?content-type=application/json&all_levels=1
+Platform: timer mark 43.683 0.001 ESP. seqprox done
+Error retrieving protein for ENST00000479537: Index: -1, Size: 1
+Platform: timer mark 44.125 0.442 ESP. getdataseq
+Platform: timer mark 44.126 0.001 ESP. getxref
+Platform: timer mark 44.274 0.147 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000645443?content-type=application/json&all_levels=1
+Platform: timer mark 44.276 0.002 ESP. seqprox done
+Adding protein product for ENST00000645443
+Platform: timer mark 44.277 0.001 EnsemblSeqProx.fetchSeq
+Platform: timer mark 44.278 0.001 ENS seqproxy
+Response code 400
+Platform: timer mark 44.425 0.146 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000645443?type=protein&Accept=application/json&content-type=application/json
+No protein product found for ENST00000645443
+Platform: timer mark 44.955 0.53 ESP. getdataseq
+Platform: timer mark 44.955 0.0 ESP. getxref
+Platform: timer mark 45.389 0.432 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644905?content-type=application/json&all_levels=1
+Platform: timer mark 45.39 0.001 ESP. seqprox done
+Adding protein product for ENST00000644905
+Platform: timer mark 45.393 0.003 EnsemblSeqProx.fetchSeq
+Platform: timer mark 45.393 0.0 ENS seqproxy
+Response code 400
+Platform: timer mark 45.541 0.146 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644905?type=protein&Accept=application/json&content-type=application/json
+No protein product found for ENST00000644905
+Platform: timer mark 46.111 0.57 ESP. getdataseq
+Platform: timer mark 46.112 0.001 ESP. getxref
+Platform: timer mark 46.535 0.422 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642228?content-type=application/json&all_levels=1
+Platform: timer mark 46.537 0.002 ESP. seqprox done
+Adding protein product for ENST00000642228
+Platform: timer mark 46.539 0.002 EnsemblSeqProx.fetchSeq
+Platform: timer mark 46.54 0.001 ENS seqproxy
+Platform: timer mark 46.708 0.168 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642228?type=protein&Accept=application/json&content-type=application/json
+Platform: timer mark 46.71 0.002 ENS seqproxy2
+Platform: timer mark 46.711 0.001 ESP. getdataseq
+Platform: timer mark 46.712 0.001 ESP. getxref
+Platform: timer mark 46.883 0.171 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000493678?content-type=application/json&all_levels=1
+Platform: timer mark 46.884 0.001 ESP. seqprox done
+Platform: timer mark 47.421 0.537 ESP. getdataseq
+Platform: timer mark 47.421 0.0 ESP. getxref
+Platform: timer mark 47.599 0.176 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644969?content-type=application/json&all_levels=1
+Platform: timer mark 47.6 0.001 ESP. seqprox done
+Adding protein product for ENST00000644969
+Platform: timer mark 47.602 0.002 EnsemblSeqProx.fetchSeq
+Platform: timer mark 47.603 0.001 ENS seqproxy
+Platform: timer mark 47.781 0.176 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644969?type=protein&Accept=application/json&content-type=application/json
+Platform: timer mark 47.782 0.001 ENS seqproxy2
+Platform: timer mark 47.785 0.003 ESP. getdataseq
+Platform: timer mark 47.786 0.001 ESP. getxref
+Platform: timer mark 47.94 0.154 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000496776?content-type=application/json&all_levels=1
+Platform: timer mark 47.941 0.001 ESP. seqprox done
+Platform: timer mark 48.435 0.494 ESP. getdataseq
+Platform: timer mark 48.436 0.001 ESP. getxref
+Platform: timer mark 48.577 0.14 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644120?content-type=application/json&all_levels=1
+Platform: timer mark 48.579 0.002 ESP. seqprox done
+Adding protein product for ENST00000644120
+Platform: timer mark 48.58 0.001 EnsemblSeqProx.fetchSeq
+Platform: timer mark 48.581 0.001 ENS seqproxy
+Response code 400
+Platform: timer mark 48.755 0.173 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644120?type=protein&Accept=application/json&content-type=application/json
+No protein product found for ENST00000644120
+Platform: timer mark 49.205 0.45 ESP. getdataseq
+Platform: timer mark 49.206 0.001 ESP. getxref
+Platform: timer mark 49.588 0.38 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642875?content-type=application/json&all_levels=1
+Platform: timer mark 49.589 0.001 ESP. seqprox done
+Adding protein product for ENST00000642875
+Platform: timer mark 49.74 0.149 EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
+Platform: timer mark 49.741 0.001 EnsemblSeqProx.fetchSeq
+Platform: timer mark 49.742 0.001 ENS seqproxy
+Response code 400
+Platform: timer mark 49.894 0.15 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642875?type=protein&Accept=application/json&content-type=application/json
+No protein product found for ENST00000642875
+Platform: timer mark 50.194 0.3 Desktop Finished querying
+Platform: timer mark 50.199 0.005 Desktop Parsing results.
+JSDesktopIconUI SURRAGATE -- NOT IMPLEMENTED YET!
+JSWIndowUI ????
+Platform: timer mark 63.835 13.636 Desktop null
+JSFrameViewer creating new canvas testApplet_canvas4: 700 465
+JSWindowUI windowOpened true
+JSFrameUI windowActivated true
+PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
+PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
+PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
+PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
+PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
+JSWIndowUI ????
+JSFrameViewer creating new canvas testApplet_canvas5: 173 18
+JSWIndowUI ????
+JSFrameViewer creating new canvas testApplet_canvas6: 138 18
+This is System.out. clear it
+Add ?j2snocore to URL to see full class list; ?j2sdebug to use uncompressed j2s/core files
+get _j2sClassList.txt Jalview TestX
+New Sequence FetcherX
+ExampleClearOKCancel
+
+ENSG00000157764
+Example query: ENSG00000157764
+Enter one or more accession IDs separated by a semi-colon ";"
+Replace commas with semi-colons
+Retrieved from ENSEMBLX
+Sequence 1 ID: ENSG00000157764 Nucleotide: Cytosine (32)
+File
+Edit
+Select
+View
+Annotations
+Format
+Colour
+Calculate
+File
+Tools
+Help
+Window
\ No newline at end of file
git://source.jalview.org / jalview.git / blobdiff