+++ /dev/null
-<?xml version="1.0"?>
-<!--
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
--->
-<mapping xmlns="http://castor.exolab.org/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
- xsi:schemaLocation="http://castor.exolab.org/ ../schemas/castor-mapping.xsd">
-<!--
- History: Originally created from EMBL_common_V1.0
- Updated on 24th April 2007 for WsDBFetch Service move to EMBL_Services_V1.1.xsd
- Updated May 2016 for EMBL XML 1.2 JAL-2113 JAL-2114
- see ftp://ftp.sra.ebi.ac.uk/meta/xsd/sra_1_5/ENA.embl.xsd
- see http://www.ebi.ac.uk/ena/submit/data-formats
- -->
- <class name="jalview.datamodel.xdb.embl.EmblFile">
- <map-to xml="ROOT"/>
- <field name="text" type="string">
- <bind-xml node="text"/>
- </field>
- <field name="entries" type="jalview.datamodel.xdb.embl.EmblEntry" collection="vector">
- <bind-xml name="entry"/>
- </field>
- <field name="errors" type="jalview.datamodel.xdb.embl.EmblError" collection="vector">
- <bind-xml name="Error"/>
- </field>
- </class>
- <class name="jalview.datamodel.xdb.embl.EmblEntry">
- <field name="accession" type="string">
- <bind-xml name="accession" node="attribute"/>
- </field>
- <!--
- in EMBL XML 1.2 sequence/@version became entry/version
- entry/@version became entry/@entryVersion
- -->
- <field name="sequenceVersion" type="string">
- <bind-xml name="version" node="attribute"/>
- </field>
- <field name="entryVersion" type="string">
- <bind-xml name="entryVersion" node="attribute"/>
- </field>
- <field name="dataClass" type="string">
- <bind-xml name="dataClass" node="attribute"/>
- </field>
- <field name="taxonomicDivision" type="string">
- <bind-xml name="taxonomicDivision" node="attribute"/>
- </field>
- <field name="moleculeType" type="string">
- <bind-xml name="moleculeType" node="attribute"/>
- </field>
- <field name="sequenceLength" type="string">
- <bind-xml name="sequenceLength" node="attribute"/>
- </field>
- <field name="topology" type="string">
- <bind-xml name="topology" node="attribute" location="type"/>
- </field>
- <field name="firstPublicDate" type="string">
- <bind-xml name="firstPublic" node="attribute"/>
- </field>
- <field name="firstPublicRelease" type="string">
- <bind-xml name="firstPublicRelease" node="attribute"/>
- </field>
- <field name="lastUpdatedDate" type="string">
- <bind-xml name="lastUpdated" node="attribute"/>
- </field>
- <field name="lastUpdatedRelease" type="string">
- <bind-xml name="lastUpdatedRelease" node="attribute"/>
- </field>
- <field name="description" type="string">
- <bind-xml name="description" node="element"/>
- </field>
- <field name="keywords" type="string" collection="vector">
- <bind-xml name="keyword" node="element"/>
- </field>
- <field name="features" type="jalview.datamodel.xdb.embl.EmblFeature" collection="vector">
- <bind-xml name="feature"/>
- </field>
- <field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
- <bind-xml name="xref" />
- </field>
- <field name="sequence" type="jalview.datamodel.xdb.embl.EmblSequence">
- <bind-xml name="sequence"/>
- </field>
- </class>
- <class name="jalview.datamodel.xdb.embl.EmblSequence">
- <field name="sequence" type="string">
- <bind-xml node="text"/>
- </field>
- </class>
- <class name="jalview.datamodel.xdb.embl.EmblFeature" verify-constructable="false">
- <field name="name" type="string">
- <bind-xml name="name" node="attribute"/>
- </field>
- <field name="location" type="string">
- <bind-xml name="location" node="attribute"/>
- </field>
- <field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
- <bind-xml name="xref" node="element"/>
- </field>
- <field name="qualifiers" type="jalview.datamodel.xdb.embl.Qualifier" collection="vector">
- <bind-xml name="qualifier"/>
- </field>
- </class>
- <class name="jalview.datamodel.DBRefEntry" verify-constructable="false">
- <field name="accessionId" type="java.lang.String">
- <bind-xml name="id" node="attribute"/>
- </field>
- <field name="source" type="java.lang.String">
- <bind-xml name="db" node="attribute"/>
- </field>
- <field name="version" type="string">
- <bind-xml name="secondaryId" node="attribute"/>
- </field>
- </class>
- <class name="jalview.datamodel.xdb.embl.Qualifier" verify-constructable="false">
- <field name="name">
- <bind-xml name="name" node="attribute"/>
- </field>
- <field name="evidence" type="string" collection="array">
- <bind-xml name="evidence" node="element"/>
- </field>
- <field name="values" type="string" collection="array">
- <bind-xml name="value" node="element"/>
- </field>
- </class>
-</mapping>
git://source.jalview.org / jalview.git / blobdiff