--- /dev/null
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<!--
+ Retrieved for Jalview 14-Sep-2018 from ftp://ftp.sra.ebi.ac.uk/meta/xsd/sra_1_5/ENA.embl.xsd
+ Modified to match ftp://ftp.sra.ebi.ac.uk/meta/xsd/sra_1_5/ENA.root.xsd with only ENA.embl.xsd included
+ root element "ROOT" contains a <choice> of "entry" (single accession) or "entrySet" (one or more accessions)
+ Java binding classes are generated by
+ xjc schemas/embl.xsd -b schemas/embl_bindings.xml -d src -p jalview.xml.binding.embl
+-->
+<xs:schema xmlns:ebi="http://www.ebi.ac.uk/embl/schema"
+ xmlns:xs="http://www.w3.org/2001/XMLSchema"
+ attributeFormDefault="unqualified" elementFormDefault="qualified"
+ version="1.1">
+ <xs:complexType name="XrefType">
+ <xs:annotation>
+ <xs:documentation>Database cross-reference.</xs:documentation>
+ </xs:annotation>
+ <xs:attribute name="db" type="xs:string" use="required" />
+ <xs:attribute name="id" type="xs:string" use="required" />
+ <xs:attribute name="secondaryId" type="xs:string"
+ use="optional" />
+ </xs:complexType>
+ <xs:complexType name="EntrySetType">
+ <xs:sequence minOccurs="1" maxOccurs="unbounded">
+ <xs:element name="entry" type="EntryType" />
+ </xs:sequence>
+ </xs:complexType>
+ <xs:complexType name="EntryType">
+ <xs:sequence>
+ <xs:element maxOccurs="unbounded" minOccurs="0"
+ name="secondaryAccession" type="xs:string" />
+ <xs:element maxOccurs="unbounded" minOccurs="0"
+ name="projectAccession" type="xs:string" />
+ <xs:element maxOccurs="1" minOccurs="1" name="description"
+ type="xs:string" />
+ <xs:element maxOccurs="1" minOccurs="0" name="comment"
+ type="xs:string" />
+ <xs:element maxOccurs="unbounded" minOccurs="0"
+ name="keyword" type="xs:string" />
+ <xs:element maxOccurs="unbounded" minOccurs="0"
+ name="reference">
+ <xs:annotation>
+ <xs:documentation>Not supported for EMBL-CDS.</xs:documentation>
+ </xs:annotation>
+ <xs:complexType>
+ <xs:sequence>
+ <xs:element maxOccurs="1" minOccurs="0" name="title"
+ type="xs:string" />
+ <xs:element maxOccurs="unbounded" minOccurs="0"
+ name="author" type="xs:string" />
+ <xs:element maxOccurs="unbounded" minOccurs="0"
+ name="applicant" type="xs:string">
+ <xs:annotation>
+ <xs:documentation>Patent applicant.</xs:documentation>
+ </xs:annotation>
+ </xs:element>
+ <xs:element maxOccurs="1" minOccurs="0"
+ name="consortium" type="xs:string" />
+ <xs:element maxOccurs="1" minOccurs="0"
+ name="submissionDate" type="xs:date">
+ <xs:annotation>
+ <xs:documentation>The submission date (used only for submission
+ references).</xs:documentation>
+ </xs:annotation>
+ </xs:element>
+ <xs:element maxOccurs="1" minOccurs="0" name="journal"
+ type="xs:string">
+ <xs:annotation>
+ <xs:documentation>The journal name (used only for article
+ references).</xs:documentation>
+ </xs:annotation>
+ </xs:element>
+ <xs:element maxOccurs="1" minOccurs="0" name="year"
+ type="xs:string">
+ <xs:annotation>
+ <xs:documentation>The publication year (used only for article
+ references).</xs:documentation>
+ </xs:annotation>
+ </xs:element>
+ <xs:element maxOccurs="1" minOccurs="0" name="volume"
+ type="xs:string">
+ <xs:annotation>
+ <xs:documentation>The volume number (used only for article
+ references).</xs:documentation>
+ </xs:annotation>
+ </xs:element>
+ <xs:element maxOccurs="1" minOccurs="0" name="issue"
+ type="xs:string">
+ <xs:annotation>
+ <xs:documentation>The issue number (used only for article
+ references).</xs:documentation>
+ </xs:annotation>
+ </xs:element>
+ <xs:element maxOccurs="1" minOccurs="0"
+ name="firstPage" type="xs:string">
+ <xs:annotation>
+ <xs:documentation>The first page (used only for article
+ references).</xs:documentation>
+ </xs:annotation>
+ </xs:element>
+ <xs:element maxOccurs="1" minOccurs="0" name="lastPage"
+ type="xs:string">
+ <xs:annotation>
+ <xs:documentation>The last page (used only for article
+ references).</xs:documentation>
+ </xs:annotation>
+ </xs:element>
+ <xs:element maxOccurs="1" minOccurs="0" name="comment"
+ type="xs:string" />
+ <xs:element maxOccurs="1" minOccurs="0"
+ name="referenceLocation" type="xs:string" />
+ <xs:element maxOccurs="unbounded" minOccurs="0"
+ name="xref" type="XrefType" />
+ </xs:sequence>
+ <xs:attribute name="type" use="required">
+ <xs:simpleType>
+ <xs:restriction base="xs:string">
+ <xs:enumeration value="submission" />
+ <xs:enumeration value="book" />
+ <xs:enumeration value="article" />
+ <xs:enumeration value="patent" />
+ <xs:enumeration value="thesis" />
+ <xs:enumeration value="unpublished" />
+ </xs:restriction>
+ </xs:simpleType>
+ </xs:attribute>
+ <xs:attribute name="number" type="xs:integer"
+ use="required" />
+ <xs:attribute name="location" type="xs:string" />
+ </xs:complexType>
+ </xs:element>
+ <xs:element maxOccurs="unbounded" minOccurs="0"
+ name="xref" type="XrefType" />
+ <xs:element maxOccurs="unbounded" minOccurs="0"
+ name="feature">
+ <xs:annotation>
+ <xs:documentation>Sequence feature.</xs:documentation>
+ </xs:annotation>
+ <xs:complexType>
+ <xs:sequence>
+ <xs:element maxOccurs="1" minOccurs="0" name="taxon">
+ <xs:complexType>
+ <xs:sequence>
+ <xs:element maxOccurs="1" minOccurs="0"
+ name="lineage">
+ <xs:complexType>
+ <xs:sequence>
+ <xs:element maxOccurs="unbounded" minOccurs="1"
+ name="taxon">
+ <xs:complexType>
+ <xs:attribute name="scientificName"
+ type="xs:string" use="required" />
+ </xs:complexType>
+ </xs:element>
+ </xs:sequence>
+ </xs:complexType>
+ </xs:element>
+ </xs:sequence>
+ <xs:attribute name="scientificName"
+ type="xs:string" use="required" />
+ <xs:attribute name="commonName" type="xs:string"
+ use="optional" />
+ <xs:attribute name="taxId" type="xs:integer"
+ use="optional" />
+ </xs:complexType>
+ </xs:element>
+ <xs:element maxOccurs="unbounded" minOccurs="0"
+ name="xref" type="XrefType" />
+ <xs:element maxOccurs="unbounded" minOccurs="0"
+ name="qualifier">
+ <xs:annotation>
+ <xs:documentation>Sequence feature qualifier.</xs:documentation>
+ </xs:annotation>
+ <xs:complexType>
+ <xs:sequence>
+ <xs:element maxOccurs="1" minOccurs="0" name="value"
+ type="xs:string" />
+ </xs:sequence>
+ <xs:attribute name="name" type="xs:string"
+ use="required" />
+ </xs:complexType>
+ </xs:element>
+ </xs:sequence>
+ <xs:attribute name="name" type="xs:string"
+ use="required" />
+ <xs:attribute name="location" type="xs:string"
+ use="required" />
+ </xs:complexType>
+ </xs:element>
+ <xs:element maxOccurs="1" minOccurs="0" name="assembly">
+ <xs:complexType>
+ <xs:sequence>
+ <xs:element maxOccurs="unbounded" minOccurs="1"
+ name="range">
+ <xs:complexType>
+ <xs:attribute name="begin" type="xs:integer"
+ use="required" />
+ <xs:attribute name="end" type="xs:integer"
+ use="required" />
+ <xs:attribute name="primaryBegin" type="xs:integer"
+ use="optional" />
+ <xs:attribute name="primaryEnd" type="xs:integer"
+ use="optional" />
+ <xs:attribute name="accession" type="xs:string"
+ use="required" />
+ <xs:attribute name="version" type="xs:integer"
+ use="required" />
+ <xs:attribute default="false" name="complement"
+ type="xs:boolean" use="optional" />
+ </xs:complexType>
+ </xs:element>
+ </xs:sequence>
+ </xs:complexType>
+ </xs:element>
+ <xs:element maxOccurs="1" minOccurs="0" name="contig">
+ <xs:complexType>
+ <xs:sequence>
+ <xs:choice maxOccurs="unbounded" minOccurs="0">
+ <xs:element maxOccurs="1" minOccurs="1" name="range">
+ <xs:complexType>
+ <xs:attribute name="begin" type="xs:integer"
+ use="required" />
+ <xs:attribute name="end" type="xs:integer"
+ use="required" />
+ <xs:attribute name="primaryBegin"
+ type="xs:integer" use="optional" />
+ <xs:attribute name="primaryEnd" type="xs:integer"
+ use="optional" />
+ <xs:attribute name="accession" type="xs:string"
+ use="required" />
+ <xs:attribute name="version" type="xs:integer"
+ use="required" />
+ <xs:attribute default="false" name="complement"
+ type="xs:boolean" use="optional" />
+ </xs:complexType>
+ </xs:element>
+ <xs:element maxOccurs="1" minOccurs="1" name="gap">
+ <xs:complexType>
+ <xs:attribute name="begin" type="xs:integer"
+ use="required" />
+ <xs:attribute name="end" type="xs:integer"
+ use="required" />
+ <xs:attribute name="length" type="xs:integer"
+ use="required" />
+ <xs:attribute default="false" name="unknownLength"
+ type="xs:boolean" use="optional" />
+ </xs:complexType>
+ </xs:element>
+ </xs:choice>
+ </xs:sequence>
+ </xs:complexType>
+ </xs:element>
+ <xs:element maxOccurs="1" minOccurs="0" name="sequence"
+ type="xs:string" />
+ </xs:sequence>
+ <xs:attribute name="accession" type="xs:string"
+ use="required" />
+ <xs:attribute name="version" type="xs:integer"
+ use="required" />
+ <xs:attribute name="entryVersion" type="xs:integer">
+ <xs:annotation>
+ <xs:documentation>Not supported for EMBL-CDS.</xs:documentation>
+ </xs:annotation>
+ </xs:attribute>
+ <xs:attribute name="dataClass" type="xs:string"
+ use="required" />
+ <xs:attribute name="taxonomicDivision" type="xs:string"
+ use="required" />
+ <xs:attribute name="moleculeType" type="xs:string"
+ use="required" />
+ <xs:attribute name="sequenceLength" type="xs:integer"
+ use="required" />
+ <xs:attribute name="topology" use="required">
+ <xs:simpleType>
+ <xs:restriction base="xs:string">
+ <xs:enumeration value="circular" />
+ <xs:enumeration value="linear" />
+ </xs:restriction>
+ </xs:simpleType>
+ </xs:attribute>
+ <xs:attribute name="firstPublic" type="xs:date">
+ <xs:annotation>
+ <xs:documentation>Not supported for EMBL-CDS.</xs:documentation>
+ </xs:annotation>
+ </xs:attribute>
+ <xs:attribute name="firstPublicRelease" type="xs:integer">
+ <xs:annotation>
+ <xs:documentation>Not supported for EMBL-CDS.</xs:documentation>
+ </xs:annotation>
+ </xs:attribute>
+ <xs:attribute name="lastUpdated" type="xs:date">
+ <xs:annotation>
+ <xs:documentation>Not supported for EMBL-CDS.</xs:documentation>
+ </xs:annotation>
+ </xs:attribute>
+ <xs:attribute name="lastUpdatedRelease" type="xs:integer">
+ <xs:annotation>
+ <xs:documentation>Not supported for EMBL-CDS.</xs:documentation>
+ </xs:annotation>
+ </xs:attribute>
+ </xs:complexType>
+ <xs:element name="ROOT">
+ <xs:complexType>
+ <xs:choice>
+ <xs:element name="entrySet" type="EntrySetType" />
+ <xs:element name="entry" type="EntryType" />
+ </xs:choice>
+ </xs:complexType>
+ </xs:element>
+</xs:schema>
git://source.jalview.org / jalview.git / blobdiff