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merge of SIFTs Branch
[jalview.git] / schemas / sifts / dataTypes.xsd
diff --git a/schemas/sifts/dataTypes.xsd b/schemas/sifts/dataTypes.xsd
new file mode 100644 (file)
index 0000000..f0947b4
--- /dev/null
+++ b/schemas/sifts/dataTypes.xsd
@@ -0,0 +1,154 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<xsd:schema targetNamespace="http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd"
+       elementFormDefault="qualified" attributeFormDefault="unqualified" version="2.0"
+       xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+       xmlns="http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd">
+       <xsd:simpleType name="entityType">
+               <xsd:restriction base="xsd:string">
+                       <xsd:enumeration value="protein"/>
+                       <xsd:enumeration value="RNA"/>
+                       <xsd:enumeration value="DNA"/>
+                       <xsd:enumeration value="domain"/>
+               </xsd:restriction>
+       </xsd:simpleType>
+       <xsd:simpleType name="dbChainId">
+               <xsd:restriction base="xsd:string">
+                       <xsd:minLength value="1"/>
+                       <xsd:maxLength value="2"/>
+               </xsd:restriction>
+       </xsd:simpleType>
+       <xsd:simpleType name="chainId">
+               <xsd:restriction base="xsd:string">
+                       <xsd:minLength value="1"/>
+                       <xsd:maxLength value="1"/>
+               </xsd:restriction>
+       </xsd:simpleType>
+       <xsd:simpleType name="cigarstring">
+               <xsd:restriction base="xsd:string">
+                       <xsd:minLength value="1"/>
+                       <xsd:whiteSpace value="collapse"/>
+                       <xsd:pattern value="(\d{0,5}\w{1})*"/>
+               </xsd:restriction>
+       </xsd:simpleType>
+       <xsd:attributeGroup name="dbRef">
+               <xsd:attribute name="dbSource" use="required">
+                       <xsd:simpleType>
+                               <xsd:restriction base="xsd:string">
+                                       <xsd:enumeration value="PDBe"/>
+                                       <xsd:enumeration value="UniProt"/>
+                                       <xsd:enumeration value="Pfam"/>
+                                       <xsd:enumeration value="CATH"/>
+                                       <xsd:enumeration value="SCOP"/>
+                                       <xsd:enumeration value="InterPro"/>
+                                       <xsd:enumeration value="PDB"/>
+                                       <xsd:enumeration value="NCBI"/>
+                                       <xsd:enumeration value="EC"/>
+                                       <xsd:enumeration value="GO"/>
+                                       <xsd:enumeration value="Astral"/>
+                               </xsd:restriction>
+                       </xsd:simpleType>
+               </xsd:attribute>
+               <xsd:attribute name="dbCoordSys" use="required">
+                       <xsd:simpleType>
+                               <xsd:restriction base="xsd:string">
+                                       <xsd:enumeration value="PDBe"/>
+                                       <xsd:enumeration value="PDBseqres"/>
+                                       <xsd:enumeration value="PDBresnum"/>
+                                       <xsd:enumeration value="UniProt"/>
+                                       <xsd:enumeration value="Astral"/>
+                               </xsd:restriction>
+                       </xsd:simpleType>
+               </xsd:attribute>
+               <xsd:attribute name="dbAccessionId" type="xsd:string" use="required"/>
+               <xsd:attribute name="dbEvidence" type="xsd:string"/>
+               <xsd:attribute name="dbVersion" type="xsd:string" use="optional"/>
+       </xsd:attributeGroup>
+       <xsd:attributeGroup name="resRef">
+               <xsd:attribute name="dbResNum" use="required">
+                       <xsd:simpleType>
+                               <xsd:restriction base="xsd:string">
+                                       <xsd:minLength value="1"/>
+                                       <xsd:pattern value="-?\d+(\S+)?"/>
+                               </xsd:restriction>
+                       </xsd:simpleType>
+               </xsd:attribute>
+               <xsd:attribute name="dbResName" use="required">
+                       <xsd:simpleType>
+                               <xsd:restriction base="xsd:string">
+                                       <xsd:minLength value="1"/>
+                                       <xsd:maxLength value="3"/>
+                                       <xsd:pattern value="\w{1,3}"/>
+                               </xsd:restriction>
+                       </xsd:simpleType>
+               </xsd:attribute>
+       </xsd:attributeGroup>
+       <xsd:attributeGroup name="detail">
+               <xsd:attribute name="dbSource" use="optional">
+                       <xsd:simpleType>
+                               <xsd:restriction base="xsd:string">
+                                       <xsd:enumeration value="PDBe"/>
+                                       <xsd:enumeration value="UniProt"/>
+                                       <xsd:enumeration value="Pfam"/>
+                                       <xsd:enumeration value="CATH"/>
+                                       <xsd:enumeration value="SCOP"/>
+                                       <xsd:enumeration value="InterPro"/>
+                                       <xsd:enumeration value="PDB"/>
+                                       <xsd:enumeration value="NCBI"/>
+                                       <xsd:enumeration value="EC"/>
+                                       <xsd:enumeration value="GO"/>
+                                       <xsd:enumeration value="Astral"/>
+                               </xsd:restriction>
+                       </xsd:simpleType>
+               </xsd:attribute>
+               <xsd:attribute name="property" type="xsd:string" use="required"/>
+       </xsd:attributeGroup>
+       <xsd:attributeGroup name="region">
+               <xsd:attribute name="start" use="optional">
+                       <xsd:simpleType>
+                               <xsd:restriction base="xsd:string">
+                                       <xsd:minLength value="1"/>
+                                       <xsd:pattern value="-?\d+(.\S)?"/>
+                               </xsd:restriction>
+                       </xsd:simpleType>
+               </xsd:attribute>
+               <xsd:attribute name="end" use="optional">
+                       <xsd:simpleType>
+                               <xsd:restriction base="xsd:string">
+                                       <xsd:minLength value="1"/>
+                                       <xsd:pattern value="-?\d+(.\S)?"/>
+                               </xsd:restriction>
+                       </xsd:simpleType>
+               </xsd:attribute>
+       </xsd:attributeGroup>
+       <xsd:attributeGroup name="listdbRef">
+               <xsd:attribute name="dbVersion" type="xsd:string" use="optional"/>
+               <xsd:attribute name="dbSource" use="required">
+                       <xsd:simpleType>
+                               <xsd:restriction base="xsd:string">
+                                       <xsd:enumeration value="PDBe"/>
+                                       <xsd:enumeration value="UniProt"/>
+                                       <xsd:enumeration value="Pfam"/>
+                                       <xsd:enumeration value="CATH"/>
+                                       <xsd:enumeration value="SCOP"/>
+                                       <xsd:enumeration value="InterPro"/>
+                                       <xsd:enumeration value="PDB"/>
+                                       <xsd:enumeration value="NCBI"/>
+                                       <xsd:enumeration value="EC"/>
+                                       <xsd:enumeration value="GO"/>
+                                       <xsd:enumeration value="Astral"/>
+                               </xsd:restriction>
+                       </xsd:simpleType>
+               </xsd:attribute>
+               <xsd:attribute name="dbCoordSys" use="required">
+                       <xsd:simpleType>
+                               <xsd:restriction base="xsd:string">
+                                       <xsd:enumeration value="PDBe"/>
+                                       <xsd:enumeration value="PDBseqres"/>
+                                       <xsd:enumeration value="PDBresnum"/>
+                                       <xsd:enumeration value="UniProt"/>
+                                       <xsd:enumeration value="Astral"/>
+                               </xsd:restriction>
+                       </xsd:simpleType>
+               </xsd:attribute>
+       </xsd:attributeGroup>
+</xsd:schema>
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