Merge branch 'develop' into features/JAL-3010ontologyFeatureSettings

[jalview.git] / schemas / vamsas.xsd

diff --git a/schemas/vamsas.xsd b/schemas/vamsas.xsd
index 22b7aac..20c19dd 100755 (executable)
--- a/schemas/vamsas.xsd
+++ b/schemas/vamsas.xsd
@@ -103,6 +103,11 @@
                                                        </xs:element>
                                                </xs:choice>
                                        </xs:sequence>
+                                       <xs:attribute name="mappingType" type="xs:string" use="optional">
+                                               <xs:annotation>
+                                                       <xs:documentation>Biotype of the mapping e.g. CdsToPeptide</xs:documentation>
+                                               </xs:annotation>
+                                       </xs:attribute>
                                </xs:extension>
                        </xs:complexContent>    
                </xs:complexType>
@@ -161,6 +166,13 @@
                                                                <xs:attribute name="source" type="xs:string"/>
                                                                <xs:attribute name="version" type="xs:string"/>
                                                                <xs:attribute name="accessionId" type="xs:string"/>
+                                                               <xs:attribute name="locus" type="xs:boolean" default="false">
+                                                                       <xs:annotation>
+                                                                               <xs:documentation>
+                                                                                       true for gene locus mapping, source=species, version=assembly, accession=chromosome
+                                                                               </xs:documentation>
+                                                                       </xs:annotation>
+                                                               </xs:attribute>
                                                        </xs:complexType>
                                                </xs:element>
                                        </xs:sequence>
@@ -171,6 +183,13 @@
                                                        </xs:documentation>
                                                </xs:annotation>
                                        </xs:attribute>
+                                       <xs:attribute name="biotype" type="xs:string" use="optional">
+                                               <xs:annotation>
+                                                       <xs:documentation>
+                                                               Biotype of the sequence (if known)
+                                                       </xs:documentation>
+                                               </xs:annotation>
+                                       </xs:attribute>
                                </xs:extension>
                        </xs:complexContent>
                </xs:complexType>