import jalview.gui.SequenceRenderer;
import jalview.io.DataSourceType;
import jalview.io.StructureFile;
+import jalview.renderer.seqfeatures.FeatureColourFinder;
import jalview.structure.AtomSpec;
import jalview.structure.StructureListener;
import jalview.structure.StructureMapping;
showFeatures = true;
}
+ FeatureColourFinder finder = new FeatureColourFinder(fr);
PDBChain chain;
if (bysequence && pdb != null)
{
tmp.startCol = sr.getResidueBoxColour(sequence[s], pos);
if (showFeatures)
{
- tmp.startCol = fr.findFeatureColour(tmp.startCol,
+ tmp.startCol = finder.findFeatureColour(tmp.startCol,
sequence[s], pos);
}
}
tmp.endCol = sr.getResidueBoxColour(sequence[s], pos);
if (showFeatures)
{
- tmp.endCol = fr.findFeatureColour(tmp.endCol,
+ tmp.endCol = finder.findFeatureColour(tmp.endCol,
sequence[s], pos);
}
}