tidied up system.out messages and moved many to stderr.

[jalview.git] / src / MCview / PDBfile.java

diff --git a/src/MCview/PDBfile.java b/src/MCview/PDBfile.java
index b06e98f..44bf1bc 100755 (executable)
--- a/src/MCview/PDBfile.java
+++ b/src/MCview/PDBfile.java
@@ -69,8 +69,8 @@ public class PDBfile extends jalview.io.FileParse {
               tmpchain.atoms.addElement(tmpatom);\r
             }\r
           } catch(NumberFormatException e) {\r
-            System.out.println("Caught" +  e);\r
-            System.out.println("Atom not added");\r
+            System.err.println("Caught" +  e);\r
+            System.err.println("Record not added to PDB model:"+lineArray.elementAt(i).toString());\r
           }\r
         }\r
       }\r
@@ -135,6 +135,7 @@ public class PDBfile extends jalview.io.FileParse {
       PDBfile pdb = new PDBfile("enkp1.pdb","File");\r
     } catch(IOException e) {\r
       System.out.println(e);\r
+      e.printStackTrace();\r
       System.exit(0);\r
     }\r
   }\r