JAL-1925 update source version in license

[jalview.git] / src / MCview / Residue.java

diff --git a/src/MCview/Residue.java b/src/MCview/Residue.java
index e99c746..66ae7ac 100755 (executable)
--- a/src/MCview/Residue.java
+++ b/src/MCview/Residue.java
@@ -1,49 +1,52 @@
-/*\r
- * Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
- *\r
- * This program is free software; you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License\r
- * as published by the Free Software Foundation; either version 2\r
- * of the License, or (at your option) any later version.\r
- *\r
- * This program is distributed in the hope that it will be useful,\r
- * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
- * GNU General Public License for more details.\r
- *\r
- * You should have received a copy of the GNU General Public License\r
- * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
- */\r
-package MCview;\r
-\r
-import java.util.*;\r
-\r
-public class Residue\r
-{\r
-  Vector atoms = new Vector();\r
-  int number;\r
-  int count;\r
-  int seqnumber;\r
-\r
-  public Residue(Vector atoms, int number, int count)\r
-  {\r
-    this.atoms = atoms;\r
-    this.number = number;\r
-    this.count = count;\r
-  }\r
-\r
-  public Atom findAtom(String name)\r
-  {\r
-    for (int i = 0; i < atoms.size(); i++)\r
-    {\r
-      if ( ( (Atom) atoms.elementAt(i)).name.equals(name))\r
-      {\r
-        return (Atom) atoms.elementAt(i);\r
-      }\r
-    }\r
-\r
-    return null;\r
-  }\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package MCview;
+
+import java.util.Vector;
+
+public class Residue
+{
+  Vector<Atom> atoms;
+
+  int number;
+
+  int count;
+
+  public Residue(Vector<Atom> resAtoms, int number, int count)
+  {
+    this.atoms = resAtoms;
+    this.number = number;
+    this.count = count;
+  }
+
+  public Atom findAtom(String name)
+  {
+    for (Atom atom : atoms)
+    {
+      if (atom.name.equals(name))
+      {
+        return atom;
+      }
+    }
+
+    return null;
+  }
+}