+++ /dev/null
-###############################################################################
-# Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
-# Copyright (C) $$Year-Rel$$ The Jalview Authors
-#
-# This file is part of Jalview.
-#
-# Jalview is free software: you can redistribute it and/or
-# modify it under the terms of the GNU General Public License
-# as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
-#
-# Jalview is distributed in the hope that it will be useful, but
-# WITHOUT ANY WARRANTY; without even the implied warranty
-# of MERCHANTABILITY or FITNESS FOR A PARTICULAR
-# PURPOSE. See the GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
-# The Jalview Authors are detailed in the 'AUTHORS' file.
-###############################################################################
-# THE CASTOR PROPERTIES FILE
-# This file specifies values for Castor run-time which may be configured
-# by the user.
-# $Id$
-
-# This section defines Backwards compatibility switches.
-#
-# Hashtable/Map default mapping.
-# For backward compatibility with 0.9.5.2 and earlier.
-#
-#org.exolab.castor.xml.saveMapKeys=false
-
-# Defines the default XML parser to be used by Castor.
-# The parser must implement org.xml.sax.Parser.
-#
-org.exolab.castor.parser=org.apache.xerces.parsers.SAXParser
-
-# Defines the (default) XML serializer factory to use by Castor, which must
-# implement org.exolab.castor.xml.SerializerFactory; default is
-# org.exolab.castor.xml.XercesXMLSerializerFactory
-#
-# When using Castor XML with JDK 5.0, you may switch to the XercesJDK5XMLSerializerFactory
-# which will use the Xerces instance as shipped with the JDK itself; this avoids
-# having to download another Xerces instance and installing it.
-org.exolab.castor.xml.serializer.factory=org.exolab.castor.xml.XercesXMLSerializerFactory
-#org.exolab.castor.xml.serializer.factory=org.exolab.castor.xml.XercesJDK5XMLSerializerFactory
-
-# Defines the NodeType for use with Java primitive types (int, long, boolean,
-# etc). This value is only used by the Introspector. Valid values are either
-# "attribute" or "element". By default, all primitives are marshaled as
-# attributes. Uncomment the following line to change the NodeType to element.
-#
-#org.exolab.castor.xml.introspector.primitive.nodetype=element
-
-# Defines the Naming "style" or conventions to use when creating XML names
-# from Java class or field names.
-# Valid values are as follows:
-# -----------------------------------------------------------------
-# lower (default) | All names are lowercase with hyphens
-# | separating words.
-# |
-# | Example: personInfo = person-info
-# -----------------------------------------------------------------
-# mixed | All names are mixed case, with Uppercase
-# | character as the first letter of a new word.
-# |
-# | Example: personInfo = personInfo
-# | Example: FooBar = fooBar
-# -----------------------------------------------------------------
-# {Any ClassName} | Any Class which implements
-# | org.exolab.castor.xml.XMLNaming
-# -----------------------------------------------------------------
-#
-# By default, all names are treated as the "lower" option. To preserve the
-# Java mixed-case conventions, uncomment the following line.
-#
-#org.exolab.castor.xml.naming=mixed
-
-###############################
-# REGULAR EXPRESSION EVALUATORS
-#
-# Defines the Regular Expression Evaluator to be used by Castor.
-# The evaluator must implement org.exolab.castor.util.RegExpEvaluator.
-#
-# Uncomment the following to basically suppress Regular expressions evaluation:
-#org.exolab.castor.regexp=org.exolab.castor.xml.util.AlwaysTrueRegExpEvaluator
-#
-# An implementation which uses the Jakarta RegExp library:
-#org.exolab.castor.regexp=org.exolab.castor.util.JakartaRegExpEvaluator
-#
-# An implementation which uses the Jakarta ORO library:
-org.exolab.castor.regexp=org.exolab.castor.util.JakartaOroEvaluator
-
-# True if all documents should be indented on output by default.
-# Defaults to false.
-#
-#org.exolab.castor.indent=true
-
-# True if xml documents should be validated by the SAX Parser
-# Defaults to false.
-#
-org.exolab.castor.parser.validation=false
-
-# True for parser to support Namespaces.
-# Defaults to false.
-#
-org.exolab.castor.parser.namespaces=false
-
-# True if all documents should be validated by the marshaling framework
-# Defaults to true.
-#
-org.exolab.castor.marshalling.validation=true
-
-# Comma separated list of SAX 2 features that should be enabled for the
-# default parser.
-#
-#org.exolab.castor.sax.features=
-
-# Comma separated list of SAX 2 features that should be disabled for the
-# default parser.
-#
-#org.exolab.castor.sax.features-to-disable
-
-# True if debugging output should be generated.
-# Defaults to false.
-#
-org.exolab.castor.debug=false
-
-# List of collection handlers for Java 1.1 and Java 1.2 run-times:
-#
-org.exolab.castor.mapping.collections=\
- org.exolab.castor.mapping.loader.J1CollectionHandlers,\
- org.exolab.castor.mapping.loader.J2CollectionHandlers
-
-# List of persistence factories for the supported database servers:
-#
-org.exolab.castor.jdo.engines=\
- org.exolab.castor.jdo.drivers.OracleFactory,\
- org.exolab.castor.jdo.drivers.PostgreSQLFactory,\
- org.exolab.castor.jdo.drivers.SybaseFactory,\
- org.exolab.castor.jdo.drivers.SQLServerFactory,\
- org.exolab.castor.jdo.drivers.DB2Factory,\
- org.exolab.castor.jdo.drivers.InformixFactory,\
- org.exolab.castor.jdo.drivers.HsqlFactory,\
- org.exolab.castor.jdo.drivers.InstantDBFactory,\
- org.exolab.castor.jdo.drivers.InterbaseFactory,\
- org.exolab.castor.jdo.drivers.MySQLFactory,\
- org.exolab.castor.jdo.drivers.SapDbFactory,\
- org.exolab.castor.jdo.drivers.GenericFactory,\
- org.exolab.castor.jdo.drivers.DerbyFactory,\
- org.castor.jdo.drivers.PointbaseFactory,\
- org.castor.jdo.drivers.ProgressFactory
-
-# List of key generator factories:
-#
-org.exolab.castor.jdo.keyGeneratorFactories=\
- org.exolab.castor.jdo.keygen.MaxKeyGeneratorFactory,\
- org.exolab.castor.jdo.keygen.HighLowKeyGeneratorFactory,\
- org.exolab.castor.jdo.keygen.IdentityKeyGeneratorFactory,\
- org.exolab.castor.jdo.keygen.SequenceKeyGeneratorFactory,\
- org.exolab.castor.jdo.keygen.UUIDKeyGeneratorFactory
-
-# Collection handlers for the source code generator:
-#
-org.exolab.castor.builder.type.j2=\
- org.exolab.castor.builder.FieldInfoFactoryJ2
-org.exolab.castor.builder.type.j1=\
- org.exolab.castor.builder.FieldInfoFactory
-org.exolab.castor.builder.type.odmg=\
- org.exolab.castor.builder.FieldInfoFactoryODMG30
-
-# Configures the default time zone to apply to dates/times fetched from
-# database fields (if not already part of the data). Specify same format as
-# in java.util.TimeZone.getTimeZone, or the empty string to use the computer's
-# local time zone. Please see http://de.wikipedia.org/wiki/Zeitzone for
-# detailed information about time zones.
-#
-org.exolab.castor.jdo.defaultTimeZone=
-#org.exolab.castor.jdo.defaultTimeZone=GMT-8:00
-
-# List of TxSynchronizeable implementations:
-#
-#org.exolab.castor.persist.TxSynchronizable=
-
-# Sets the buffer size in bytes for fetching LOBs (this is dependent upon
-# the JDBC driver implementation). The value below == 5k.
-#
-org.exolab.castor.jdo.lobBufferSize=5120
-
-# True if database configuration should be initalization
-# when loading it (default: true).
-#
-#org.exolab.castor.jdo.DatabaseInitializeAtLoad=true
-
-# True if proxy classes should be used for JDBC connections and
-# prepared statements.
-# Defaults to true.
-#
-org.exolab.castor.persist.useProxies=false
-
-# MappingLoader implementations:
-#
-org.castor.mapping.loaderFactories=\
- org.castor.mapping.JDOMappingLoaderFactory,\
- org.castor.mapping.XMLMappingLoaderFactory
-
-# Cache implementations:
-#
-org.castor.cache.Factories=\
- org.castor.cache.simple.NoCacheFactory,\
- org.castor.cache.simple.TimeLimitedFactory,\
- org.castor.cache.simple.CountLimitedFactory,\
- org.castor.cache.simple.UnlimitedFactory,\
- org.castor.cache.distributed.FKCacheFactory,\
- org.castor.cache.distributed.JcsCacheFactory,\
- org.castor.cache.distributed.JCacheFactory,\
- org.castor.cache.distributed.CoherenceCacheFactory,\
- org.castor.cache.distributed.OsCacheFactory,\
- org.castor.cache.hashbelt.FIFOHashbeltFactory,\
- org.castor.cache.hashbelt.LRUHashbeltFactory,\
- org.castor.cache.distributed.EHCacheFactory,\
- org.castor.cache.distributed.GigaspacesCacheFactory
-
-# TransactionManagerFactory implementations:
-#
-org.castor.transactionmanager.Factories=\
- org.castor.transactionmanager.WebSphereTransactionManagerFactory,\
- org.castor.transactionmanager.WebSphere5TransactionManagerFactory,\
- org.castor.transactionmanager.WebSphere51TransactionManagerFactory,\
- org.castor.transactionmanager.LocalTransactionManagerFactory,\
- org.castor.transactionmanager.JNDIENCTransactionManagerFactory,\
- org.castor.transactionmanager.JOTMTransactionManagerFactory
-
-# Selects whether the TransactionManager should be initialized at registration,
-# or lazily when requested for the first time.
-# Defaults to false.
-#
-org.castor.transactionmanager.InitializeAtRegistration=false
-
-# Instructs Castor JDO to use the JDBC 3.0-specific features to obtain
-# the generated value of an identity column.
-# Defaults to false.
-#
-org.castor.jdo.use.jdbc30=false
-
-# Specifies whether to use ANSI-compliant SQL for MS SQL Server.
-# Defaults to false.
-#
-org.exolab.castor.jdo.sqlserver.ansi-compliant=false
-
-# Specifyies whether the ClassDescriptorResolver should (automatically) search
-# for and consult with package mapping files (.castor.xml) to retrieve class
-# descriptor information; on by default.
-# Defaults to true.
-#
-#org.exolab.castor.xml.loadPackageMappings=false
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