Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into alpha/merge_212_JalviewJS_2112

[jalview.git] / src / jalview / analysis / AlignmentSorter.java

diff --git a/src/jalview/analysis/AlignmentSorter.java b/src/jalview/analysis/AlignmentSorter.java
index 2d05865..8a387c7 100755 (executable)
--- a/src/jalview/analysis/AlignmentSorter.java
+++ b/src/jalview/analysis/AlignmentSorter.java
@@ -147,8 +147,8 @@ public class AlignmentSorter
     }
 
     // NOTE: DO NOT USE align.setSequenceAt() here - it will NOT work
-    List<SequenceI> asq;
-    synchronized (asq = align.getSequences())
+    List<SequenceI> asq = align.getSequences();
+    synchronized (asq)
     {
       for (int i = 0; i < len; i++)
       {
@@ -183,8 +183,8 @@ public class AlignmentSorter
   public static void setOrder(AlignmentI align, SequenceI[] seqs)
   {
     // NOTE: DO NOT USE align.setSequenceAt() here - it will NOT work
-    List<SequenceI> algn;
-    synchronized (algn = align.getSequences())
+    List<SequenceI> algn = align.getSequences();
+    synchronized (algn)
     {
       List<SequenceI> tmp = new ArrayList<>();