*/
package jalview.analysis;
-import java.util.ArrayList;
-import java.util.List;
-import java.util.Vector;
-
import jalview.datamodel.AlignedCodonFrame;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.ws.SequenceFetcher;
import jalview.ws.seqfetcher.ASequenceFetcher;
+import java.util.ArrayList;
+import java.util.List;
+import java.util.Vector;
+
/**
* Functions for cross-referencing sequence databases. user must first specify
* if cross-referencing from protein or dna (set dna==true)
{
found |= searchDataset(dss, xrfs[r], dataset, rseqs, cf); // ,false,!dna);
if (found)
- {
+ {
xrfs[r] = null; // we've recovered seqs for this one.
}
}
*/
private static boolean searchDatasetXrefs(SequenceI sequenceI,
boolean dna, DBRefEntry[] lrfs, AlignmentI dataset,
- List<SequenceI> rseqs,
- AlignedCodonFrame cf)
+ List<SequenceI> rseqs, AlignedCodonFrame cf)
{
boolean found = false;
if (lrfs == null)