JAL-1636 translate stop codon as '*', mouseover * as STOP

[jalview.git] / src / jalview / analysis / Dna.java

diff --git a/src/jalview/analysis/Dna.java b/src/jalview/analysis/Dna.java
index 1d5f996..5696838 100644 (file)
--- a/src/jalview/analysis/Dna.java
+++ b/src/jalview/analysis/Dna.java
@@ -20,12 +20,6 @@
  */
 package jalview.analysis;
 
-import java.util.ArrayList;
-import java.util.Arrays;
-import java.util.Comparator;
-import java.util.List;
-import java.util.Map;
-
 import jalview.api.AlignViewportI;
 import jalview.datamodel.AlignedCodon;
 import jalview.datamodel.AlignedCodonFrame;
@@ -47,9 +41,15 @@ import jalview.util.DBRefUtils;
 import jalview.util.MapList;
 import jalview.util.ShiftList;
 
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.Comparator;
+import java.util.List;
+import java.util.Map;
+
 public class Dna
 {
-  private static final String STOP_X = "X";
+  private static final String STOP_ASTERIX = "*";
 
   private static final Comparator<AlignedCodon> comparator = new CodonComparator();
 
@@ -544,7 +544,7 @@ public class Dna
           }
           if (aa.equals("STOP"))
           {
-            aa = STOP_X;
+            aa = STOP_ASTERIX;
           }
           resSize++;
         }