Merge branch 'update/JAL-3949_jalview_bin_Console_to_cure_sanity_even_more' of https...

[jalview.git] / src / jalview / analysis / GeneticCodes.java

diff --git a/src/jalview/analysis/GeneticCodes.java b/src/jalview/analysis/GeneticCodes.java
index 59b698d..a2ecdca 100644 (file)
--- a/src/jalview/analysis/GeneticCodes.java
+++ b/src/jalview/analysis/GeneticCodes.java
@@ -21,9 +21,6 @@
 package jalview.analysis;
 
 import java.util.Locale;
-
-import jalview.bin.Cache;
-
 import java.io.BufferedReader;
 import java.io.IOException;
 import java.io.InputStream;
@@ -33,6 +30,8 @@ import java.util.LinkedHashMap;
 import java.util.Map;
 import java.util.StringTokenizer;
 
+import jalview.bin.Console;
+
 /**
  * A singleton that provides instances of genetic code translation tables
  * 
@@ -162,7 +161,7 @@ public final class GeneticCodes
       }
     } catch (IOException | NullPointerException e)
     {
-      Cache.error(
+      Console.error(
               "Error reading genetic codes data file " + fileName + ": "
               + e.getMessage());
     }
@@ -217,7 +216,7 @@ public final class GeneticCodes
       }
     } catch (IOException e)
     {
-      Cache.error(
+      Console.error(
               "Error reading nucleotide ambiguity codes data file: "
                       + e.getMessage());
     }
@@ -294,7 +293,7 @@ public final class GeneticCodes
                 line.lastIndexOf(QUOTE));
         if (aminos.length() != NUCS_COUNT_CUBED) // 4 * 4 * 4 combinations
         {
-          Cache.error("wrong data length in code table: " + line);
+          Console.error("wrong data length in code table: " + line);
         }
         else
         {