/**
* abstract interface implemented by alignment panels holding an alignment view
+ *
* @author JimP
- *
+ *
*/
public interface AlignmentViewPanel extends OOMHandlerI
{
AlignmentI getAlignment();
+
StructureSelectionManager getStructureSelectionManager();
+
/**
* repaint the alignment view after a datamodel update.
- * @param updateOverview - if true, the overview panel will also be updated and repainted
+ *
+ * @param updateOverview
+ * - if true, the overview panel will also be updated and repainted
*/
-
+
void paintAlignment(boolean updateOverview);
+
/**
- * automatically adjust annotation panel height for new annotation
- * whilst ensuring the alignment is still visible.
+ * automatically adjust annotation panel height for new annotation whilst
+ * ensuring the alignment is still visible.
*/
void adjustAnnotationHeight();
}