merge

[jalview.git] / src / jalview / api / ComplexAlignFile.java

diff --git a/src/jalview/api/ComplexAlignFile.java b/src/jalview/api/ComplexAlignFile.java
new file mode 100644 (file)
index 0000000..0d731cd
--- /dev/null
+++ b/src/jalview/api/ComplexAlignFile.java
@@ -0,0 +1,17 @@
+package jalview.api;
+
+import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.SequenceI;
+import jalview.schemes.ColourSchemeI;
+
+public interface ComplexAlignFile
+{
+  public boolean isShowSeqFeatures();
+
+  public ColourSchemeI getColourScheme();
+
+  public ColumnSelection getColumnSelection();
+
+  public SequenceI[] getHiddenSequences();
+
+}