JAL-2422 pull up refactoring in preparation for ChimeraX subclasses

[jalview.git] / src / jalview / api / structures / JalviewStructureDisplayI.java

diff --git a/src/jalview/api/structures/JalviewStructureDisplayI.java b/src/jalview/api/structures/JalviewStructureDisplayI.java
index 8f778f7..f59e4cb 100644 (file)
--- a/src/jalview/api/structures/JalviewStructureDisplayI.java
+++ b/src/jalview/api/structures/JalviewStructureDisplayI.java
@@ -125,4 +125,41 @@ public interface JalviewStructureDisplayI
    */
   void raiseViewer();
 
+  AlignmentViewPanel getAlignmentPanel();
+
+  /**
+   * Answers true if the given alignment view is used to colour structures by
+   * sequence, false if not
+   * 
+   * @param ap
+   * @return
+   */
+  boolean isUsedForColourBy(AlignmentViewPanel ap);
+
+  /**
+   * If implemented, shows a command line console in the structure viewer
+   * 
+   * @param show
+   *          true to show, false to hide
+   */
+  void showConsole(boolean show);
+
+  /**
+   * Remove references to the given alignment view for this structure viewer
+   * 
+   * @param avp
+   */
+  void removeAlignmentPanel(AlignmentViewPanel avp);
+
+  /**
+   * Updates the progress bar if there is one. Call stopProgressBar with the
+   * returned handle to remove the message.
+   * 
+   * @param msg
+   * @return handle
+   */
+  long startProgressBar(String progressMsg);
+
+  void stopProgressBar(Object object, long handle);
+
 }