Use paintAlignment

[jalview.git] / src / jalview / appletgui / APopupMenu.java

diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index fde6bb8..a103073 100755 (executable)
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -436,7 +436,7 @@ public class APopupMenu
     {\r
       seq.setName(dialog.getName());\r
       seq.setDescription(dialog.getDescription());\r
-      ap.repaint();\r
+      ap.paintAlignment(false);\r
     }\r
   }\r
 \r
@@ -561,11 +561,7 @@ public class APopupMenu
 \r
   void refresh()\r
   {\r
-    ap.seqPanel.seqCanvas.repaint();\r
-    if (ap.overviewPanel != null)\r
-    {\r
-      ap.overviewPanel.updateOverviewImage();\r
-    }\r
+    ap.paintAlignment(true);\r
   }\r
 \r
   protected void clustalColour_actionPerformed()\r
@@ -739,7 +735,7 @@ public class APopupMenu
     SequenceGroup sg = ap.av.getSelectionGroup();\r
     ap.av.alignment.deleteGroup(sg);\r
     ap.av.setSelectionGroup(null);\r
-    ap.repaint();\r
+    ap.paintAlignment(true);\r
   }\r
 \r
   public void showColourText_itemStateChanged()\r