patched for JAL-531 - only display full symbol distribution stats on tooltip/annotati...

[jalview.git] / src / jalview / appletgui / AlignViewport.java

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index 85c8ab5..ff3fe55 100755 (executable)
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -559,7 +559,7 @@ public class AlignViewport
 
         hconsensus = new Hashtable[aWidth];
         AAFrequency.calculate(alignment.getSequencesArray(), 0, alignment
-                .getWidth(), hconsensus, includeAllConsensusSymbols);
+                .getWidth(), hconsensus, true); // always calculate the full profile
         AAFrequency.completeConsensus(consensus, hconsensus, 0, aWidth,
                 ignoreGapsInConsensusCalculation,
                 includeAllConsensusSymbols);