Merge branch 'develop' into spike/JAL-4047/JAL-4048_columns_in_sequenceID

[jalview.git] / src / jalview / appletgui / AlignmentPanel.java

diff --git a/src/jalview/appletgui/AlignmentPanel.java b/src/jalview/appletgui/AlignmentPanel.java
index fd75296..71ddcef 100644 (file)
--- a/src/jalview/appletgui/AlignmentPanel.java
+++ b/src/jalview/appletgui/AlignmentPanel.java
@@ -363,7 +363,7 @@ public class AlignmentPanel extends Panel
       {
         if (JalviewLite.debug)
         {// DEBUG
-          System.out.println(
+          jalview.bin.Console.outPrintln(
                   "DEBUG: scroll didn't happen - results not within alignment : "
                           + seq.getStart() + "," + seq.getEnd());
         }
@@ -373,7 +373,7 @@ public class AlignmentPanel extends Panel
       {
         // DEBUG
         /*
-         * System.out.println("DEBUG: scroll: start=" + r[0] +
+         * jalview.bin.Console.outPrintln("DEBUG: scroll: start=" + r[0] +
          * " av.getStartRes()=" + av.getStartRes() + " end=" + r[1] +
          * " seq.end=" + seq.getEnd() + " av.getEndRes()=" + av.getEndRes() +
          * " hextent=" + hextent);
@@ -555,7 +555,7 @@ public class AlignmentPanel extends Panel
     // this is called after loading new annotation onto alignment
     if (alignFrame.getSize().height == 0)
     {
-      System.out.println(
+      jalview.bin.Console.outPrintln(
               "adjustAnnotationHeight frame size zero NEEDS FIXING");
     }
     fontChanged();
@@ -693,7 +693,7 @@ public class AlignmentPanel extends Panel
 
       if ((hextent + x) > width)
       {
-        System.err.println("hextent was " + hextent + " and x was " + x);
+        jalview.bin.Console.errPrintln("hextent was " + hextent + " and x was " + x);
 
         x = width - hextent;
       }
@@ -710,7 +710,7 @@ public class AlignmentPanel extends Panel
 
       if (x < 0)
       {
-        System.err.println("x was " + x);
+        jalview.bin.Console.errPrintln("x was " + x);
         x = 0;
       }
 
@@ -1111,7 +1111,7 @@ public class AlignmentPanel extends Panel
   public void raiseOOMWarning(String string, OutOfMemoryError error)
   {
     // TODO: JAL-960
-    System.err.println("Out of memory whilst '" + string + "'");
+    jalview.bin.Console.errPrintln("Out of memory whilst '" + string + "'");
     error.printStackTrace();
   }