JAL-2349 JAL-3855 experimenting with filtering columns based on mean of contact map...

[jalview.git] / src / jalview / appletgui / AnnotationColumnChooser.java

diff --git a/src/jalview/appletgui/AnnotationColumnChooser.java b/src/jalview/appletgui/AnnotationColumnChooser.java
index 206b132..37b45f9 100644 (file)
--- a/src/jalview/appletgui/AnnotationColumnChooser.java
+++ b/src/jalview/appletgui/AnnotationColumnChooser.java
@@ -20,12 +20,6 @@
  */
 package jalview.appletgui;
 
-import jalview.datamodel.AlignmentAnnotation;
-import jalview.datamodel.HiddenColumns;
-import jalview.schemes.AnnotationColourGradient;
-import jalview.util.MessageManager;
-import jalview.viewmodel.annotationfilter.AnnotationFilterParameter;
-
 import java.awt.BorderLayout;
 import java.awt.CardLayout;
 import java.awt.Checkbox;
@@ -48,6 +42,12 @@ import java.awt.event.TextEvent;
 import java.awt.event.TextListener;
 import java.util.Vector;
 
+import jalview.datamodel.AlignmentAnnotation;
+import jalview.datamodel.HiddenColumns;
+import jalview.schemes.AnnotationColourGradient;
+import jalview.util.MessageManager;
+import jalview.viewmodel.annotationfilter.AnnotationFilterParameter;
+
 //import javax.swing.JPanel;
 
 //import net.miginfocom.swing.MigLayout;
@@ -492,8 +492,8 @@ public class AnnotationColumnChooser extends AnnotationRowFilter implements
     // filterAnnotations, because showing hidden columns has the side effect of
     // adding them to the selection
     av.showAllHiddenColumns();
-    av.getColumnSelection().filterAnnotations(
-            getCurrentAnnotation().annotations, filterParams);
+    av.getColumnSelection().filterAnnotations(getCurrentAnnotation(),
+            filterParams);
 
     if (getActionOption() == ACTION_OPTION_HIDE)
     {