JAL-2446 merged to spike branch

[jalview.git] / src / jalview / appletgui / AnnotationLabels.java

diff --git a/src/jalview/appletgui/AnnotationLabels.java b/src/jalview/appletgui/AnnotationLabels.java
index b28ccc7..307301d 100755 (executable)
--- a/src/jalview/appletgui/AnnotationLabels.java
+++ b/src/jalview/appletgui/AnnotationLabels.java
@@ -339,7 +339,8 @@ public class AnnotationLabels extends Panel implements ActionListener,
                 av.calcPanelHeight());
         f.height += dif;
         ap.seqPanelHolder.setPreferredSize(f);
-        ap.setScrollValues(av.getStartRes(), av.getStartSeq());
+        ap.setScrollValues(av.getRanges().getStartRes(), av.getRanges()
+                .getStartSeq());
         ap.validate();
         // ap.paintAlignment(true);
         ap.addNotify();
@@ -838,7 +839,8 @@ public class AnnotationLabels extends Panel implements ActionListener,
     if (av.hasHiddenColumns())
     {
       jalview.appletgui.AlignFrame.copiedHiddenColumns = new Vector();
-      for (int[] region : av.getColumnSelection().getHiddenColumns())
+      for (int[] region : av.getAlignment().getHiddenColumns()
+              .getHiddenRegions())
       {
         jalview.appletgui.AlignFrame.copiedHiddenColumns
                 .addElement(new int[] { region[0], region[1] });