JAL-2773 add new flag to paintAlignment(updateOverview,updateStructures) and first...

[jalview.git] / src / jalview / appletgui / AnnotationLabels.java

diff --git a/src/jalview/appletgui/AnnotationLabels.java b/src/jalview/appletgui/AnnotationLabels.java
index 2fb737a..d8f65a5 100755 (executable)
--- a/src/jalview/appletgui/AnnotationLabels.java
+++ b/src/jalview/appletgui/AnnotationLabels.java
@@ -226,7 +226,8 @@ public class AnnotationLabels extends Panel
     ap.annotationPanel.adjustPanelHeight();
     setSize(getSize().width, ap.annotationPanel.getSize().height);
     ap.validate();
-    ap.paintAlignment(true);
+    // TODO: only paint if we needed to
+    ap.paintAlignment(true, true);
   }
 
   boolean editLabelDescription(AlignmentAnnotation annotation)
@@ -548,7 +549,7 @@ public class AnnotationLabels extends Panel
                 {
                   ap.av.setIgnoreGapsConsensus(cbmi.getState(), ap);
                 }
-                ap.paintAlignment(true);
+                ap.paintAlignment(true, true);
               }
             });
             popup.add(cbmi);
@@ -756,7 +757,7 @@ public class AnnotationLabels extends Panel
                 }
               }
             }
-            ap.paintAlignment(false);
+            ap.paintAlignment(false, false);
             PaintRefresher.Refresh(ap, ap.av.getSequenceSetId());
             ap.av.sendSelection();
           }
@@ -813,7 +814,7 @@ public class AnnotationLabels extends Panel
               sg.addSequence(aa[selectedRow].sequenceRef, false);
             }
             ap.av.setSelectionGroup(sg);
-            ap.paintAlignment(false);
+            ap.paintAlignment(false, false);
             PaintRefresher.Refresh(ap, ap.av.getSequenceSetId());
             ap.av.sendSelection();
           }