SequenceFeature[] tmpfeatures;
String group = null, type;
Vector visibleChecks = new Vector();
SequenceFeature[] tmpfeatures;
String group = null, type;
Vector visibleChecks = new Vector();
for (int i = 0; i < alignment.getHeight(); i++)
{
if (alignment.getSequenceAt(i).getSequenceFeatures() == null)
for (int i = 0; i < alignment.getHeight(); i++)
{
if (alignment.getSequenceAt(i).getSequenceFeatures() == null)