apply jalview code style

[jalview.git] / src / jalview / appletgui / SeqPanel.java

diff --git a/src/jalview/appletgui/SeqPanel.java b/src/jalview/appletgui/SeqPanel.java
index c5b6d1c..24f4786 100755 (executable)
--- a/src/jalview/appletgui/SeqPanel.java
+++ b/src/jalview/appletgui/SeqPanel.java
@@ -464,14 +464,14 @@ public class SeqPanel extends Panel implements MouseMotionListener,
         av.setSelectionGroup(null);
       }
 
-      SequenceFeature[] features = findFeaturesAtRes(sequence, sequence
-              .findPosition(findRes(evt)));
+      SequenceFeature[] features = findFeaturesAtRes(sequence,
+              sequence.findPosition(findRes(evt)));
 
       if (features != null && features.length > 0)
       {
         SearchResults highlight = new SearchResults();
-        highlight.addResult(sequence, features[0].getBegin(), features[0]
-                .getEnd());
+        highlight.addResult(sequence, features[0].getBegin(),
+                features[0].getEnd());
         seqCanvas.highlightSearchResults(highlight);
       }
       if (features != null && features.length > 0)
@@ -580,8 +580,8 @@ public class SeqPanel extends Panel implements MouseMotionListener,
 
       y -= hgap;
 
-      seq = Math.min((y % cHeight) / av.getCharHeight(), av.alignment
-              .getHeight() - 1);
+      seq = Math.min((y % cHeight) / av.getCharHeight(),
+              av.alignment.getHeight() - 1);
       if (seq < 0)
       {
         seq = -1;
@@ -734,8 +734,8 @@ public class SeqPanel extends Panel implements MouseMotionListener,
     }
 
     // use aa to see if the mouse pointer is on a
-    SequenceFeature[] allFeatures = findFeaturesAtRes(sequence, sequence
-            .findPosition(res));
+    SequenceFeature[] allFeatures = findFeaturesAtRes(sequence,
+            sequence.findPosition(res));
 
     int index = 0;
     while (index < allFeatures.length)
@@ -836,9 +836,7 @@ public class SeqPanel extends Panel implements MouseMotionListener,
           fontSize = 1;
         }
 
-        av
-                .setFont(new Font(av.font.getName(), av.font.getStyle(),
-                        fontSize));
+        av.setFont(new Font(av.font.getName(), av.font.getStyle(), fontSize));
         av.charWidth = oldWidth;
       }
       else
@@ -1348,8 +1346,8 @@ public class SeqPanel extends Panel implements MouseMotionListener,
     // DETECT RIGHT MOUSE BUTTON IN AWT
     if ((evt.getModifiers() & InputEvent.BUTTON3_MASK) == InputEvent.BUTTON3_MASK)
     {
-      SequenceFeature[] allFeatures = findFeaturesAtRes(sequence, sequence
-              .findPosition(res));
+      SequenceFeature[] allFeatures = findFeaturesAtRes(sequence,
+              sequence.findPosition(res));
 
       Vector links = null;
       if (allFeatures != null)
@@ -1420,9 +1418,9 @@ public class SeqPanel extends Panel implements MouseMotionListener,
     {
       if (stretchGroup.cs instanceof ClustalxColourScheme)
       {
-        ((ClustalxColourScheme) stretchGroup.cs).resetClustalX(stretchGroup
-                .getSequences(av.hiddenRepSequences), stretchGroup
-                .getWidth());
+        ((ClustalxColourScheme) stretchGroup.cs).resetClustalX(
+                stretchGroup.getSequences(av.hiddenRepSequences),
+                stretchGroup.getWidth());
       }
 
       if (stretchGroup.cs instanceof Blosum62ColourScheme
@@ -1435,14 +1433,14 @@ public class SeqPanel extends Panel implements MouseMotionListener,
 
       if (stretchGroup.cs.conservationApplied())
       {
-        SliderPanel.setConservationSlider(ap, stretchGroup.cs, stretchGroup
-                .getName());
+        SliderPanel.setConservationSlider(ap, stretchGroup.cs,
+                stretchGroup.getName());
         stretchGroup.recalcConservation();
       }
       else
       {
-        SliderPanel.setPIDSliderSource(ap, stretchGroup.cs, stretchGroup
-                .getName());
+        SliderPanel.setPIDSliderSource(ap, stretchGroup.cs,
+                stretchGroup.getName());
       }
     }
     changeEndRes = false;