JAL-3127 pass reference to AlignViewportI when creating an instance of ColourSchemeI

[jalview.git] / src / jalview / appletgui / TreeCanvas.java

diff --git a/src/jalview/appletgui/TreeCanvas.java b/src/jalview/appletgui/TreeCanvas.java
index 6ee75bd..cb26fb5 100755 (executable)
--- a/src/jalview/appletgui/TreeCanvas.java
+++ b/src/jalview/appletgui/TreeCanvas.java
@@ -631,7 +631,7 @@ public class TreeCanvas extends Panel
 
       Vector<SequenceNode> l = tree.findLeaves(groups.get(i));
 
-      Vector<SequenceI> sequences = new Vector<SequenceI>();
+      Vector<SequenceI> sequences = new Vector<>();
       for (int j = 0; j < l.size(); j++)
       {
         SequenceI s1 = (SequenceI) l.elementAt(j).element();
@@ -657,7 +657,8 @@ public class TreeCanvas extends Panel
         }
         else
         {
-          cs = ColourSchemeProperty.getColourScheme(sg, ColourSchemeProperty
+          cs = ColourSchemeProperty.getColourScheme(av, sg,
+                  ColourSchemeProperty
                   .getColourName(av.getGlobalColourScheme()));
         }
         // cs is null if shading is an annotationColourGradient