Merge remote-tracking branch 'origin/releases/Release_2_10_2b1_Branch'

[jalview.git] / src / jalview / appletgui / TreePanel.java

diff --git a/src/jalview/appletgui/TreePanel.java b/src/jalview/appletgui/TreePanel.java
index c7bf6aa..b5e3342 100644 (file)
--- a/src/jalview/appletgui/TreePanel.java
+++ b/src/jalview/appletgui/TreePanel.java
@@ -45,8 +45,8 @@ import java.awt.event.ActionListener;
 import java.awt.event.ItemEvent;
 import java.awt.event.ItemListener;
 
-public class TreePanel extends EmbmenuFrame implements ActionListener,
-        ItemListener
+public class TreePanel extends EmbmenuFrame
+        implements ActionListener, ItemListener
 {
   SequenceI[] seq;
 
@@ -160,8 +160,8 @@ public class TreePanel extends EmbmenuFrame implements ActionListener,
         AlignFrame af = new AlignFrame(al, av.applet,
                 "Original Data for Tree", false);
 
-        af.viewport.getAlignment().setHiddenColumns(
-                (HiddenColumns) alAndColsel[1]);
+        af.viewport.getAlignment()
+                .setHiddenColumns((HiddenColumns) alAndColsel[1]);
       }
     }
     else
@@ -194,8 +194,8 @@ public class TreePanel extends EmbmenuFrame implements ActionListener,
         ScoreModelI sm1 = ScoreModels.getInstance().getScoreModel(pwtype,
                 treeCanvas.ap);
         ScoreModelI sm = sm1;
-        TreeBuilder njtree = type.equals(TreeBuilder.NEIGHBOUR_JOINING) ? new NJTree(
-                av, sm, SimilarityParams.Jalview)
+        TreeBuilder njtree = type.equals(TreeBuilder.NEIGHBOUR_JOINING)
+                ? new NJTree(av, sm, SimilarityParams.Jalview)
                 : new AverageDistanceTree(av, sm, SimilarityParams.Jalview);
         tree = new TreeModel(njtree);
       }
@@ -217,8 +217,8 @@ public class TreePanel extends EmbmenuFrame implements ActionListener,
         bootstrapMenu.setState(showBoots);
         treeCanvas.setShowBootstrap(showBoots);
         treeCanvas.setShowDistances(showDist);
-        treeCanvas.setMarkPlaceholders(av.applet.getDefaultParameter(
-                "showUnlinkedTreeNodes", false));
+        treeCanvas.setMarkPlaceholders(av.applet
+                .getDefaultParameter("showUnlinkedTreeNodes", false));
       }
 
       treeCanvas.repaint();
@@ -336,13 +336,13 @@ public class TreePanel extends EmbmenuFrame implements ActionListener,
     jMenu2.setLabel(MessageManager.getString("action.view"));
     fontSize.setLabel(MessageManager.getString("action.font"));
     fontSize.addActionListener(this);
-    bootstrapMenu.setLabel(MessageManager
-            .getString("label.show_bootstrap_values"));
+    bootstrapMenu.setLabel(
+            MessageManager.getString("label.show_bootstrap_values"));
     bootstrapMenu.addItemListener(this);
     distanceMenu.setLabel(MessageManager.getString("label.show_distances"));
     distanceMenu.addItemListener(this);
-    placeholdersMenu.setLabel(MessageManager
-            .getString("label.mark_unassociated_leaves"));
+    placeholdersMenu.setLabel(
+            MessageManager.getString("label.mark_unassociated_leaves"));
     placeholdersMenu.addItemListener(this);
     fitToWindow.setState(true);
     fitToWindow.setLabel(MessageManager.getString("label.fit_to_window"));