added commented out seqStrings comment.

[jalview.git] / src / jalview / appletgui / TreePanel.java

diff --git a/src/jalview/appletgui/TreePanel.java b/src/jalview/appletgui/TreePanel.java
index ddfcbe3..9c71a15 100755 (executable)
--- a/src/jalview/appletgui/TreePanel.java
+++ b/src/jalview/appletgui/TreePanel.java
@@ -134,11 +134,11 @@ public class TreePanel extends Frame implements ActionListener, ItemListener
         {\r
           int start, end;\r
           SequenceI [] seqs;\r
-          CigarArray seqStrings = null;\r
-        //  if (av.hasHiddenColumns)\r
-          {\r
-        //    seqStrings = av.getSelectionAsString();\r
-          }\r
+          String[] seqStrings = null;\r
+//          if (av.hasHiddenColumns)\r
+  //        {\r
+    //        seqStrings = av.getAlignmentView(av.getSelectionGroup()!=null); // av.getSelectionAsString();\r
+      //    }\r
 \r
           if(av.getSelectionGroup()==null)\r
           {\r
@@ -153,7 +153,7 @@ public class TreePanel extends Frame implements ActionListener, ItemListener
             seqs = av.getSelectionGroup().getSequencesInOrder(av.alignment);\r
           }\r
 \r
-          tree = new NJTree(seqs, seqStrings, type, pwtype, start, end);\r
+          tree = new NJTree(seqs, null, type, pwtype, start, end);\r
         }\r
 \r
       tree.reCount(tree.getTopNode());\r