JAL-2773 add new flag to paintAlignment(updateOverview,updateStructures) and first...

[jalview.git] / src / jalview / appletgui / UserDefinedColours.java

diff --git a/src/jalview/appletgui/UserDefinedColours.java b/src/jalview/appletgui/UserDefinedColours.java
index d1c0e1b..6831a73 100644 (file)
--- a/src/jalview/appletgui/UserDefinedColours.java
+++ b/src/jalview/appletgui/UserDefinedColours.java
@@ -64,7 +64,7 @@ public class UserDefinedColours extends Panel
 
   Button selectedButton;
 
-  Vector<Color> oldColours = new Vector<Color>();
+  Vector<Color> oldColours = new Vector<>();
 
   ColourSchemeI oldColourScheme;
 
@@ -520,7 +520,7 @@ public class UserDefinedColours extends Panel
                 ap.av.isIgnoreGapsConsensus());
       }
       ap.seqPanel.seqCanvas.img = null;
-      ap.paintAlignment(true);
+      ap.paintAlignment(true, true);
     }
     else if (jmol != null)
     {
@@ -599,7 +599,7 @@ public class UserDefinedColours extends Panel
       {
         ap.av.setGlobalColourScheme(oldColourScheme);
       }
-      ap.paintAlignment(true);
+      ap.paintAlignment(true, true);
     }
 
     frame.setVisible(false);