JAL-4290 Add method to allow for specific settings. Revert setting show annotations.

[jalview.git] / src / jalview / bin / Commands.java

diff --git a/src/jalview/bin/Commands.java b/src/jalview/bin/Commands.java
index ece573d..5f723c1 100644 (file)
--- a/src/jalview/bin/Commands.java
+++ b/src/jalview/bin/Commands.java
@@ -908,7 +908,8 @@ public class Commands
           boolean showSSAnnotations, boolean showAnnotations,
           boolean hideTFrows)
   {
-    af.setAnnotationsVisibility(true, showSSAnnotations, showAnnotations);
+    af.setAnnotationsVisibility(showSSAnnotations, true, false);
+    af.setAnnotationsVisibility(showAnnotations, false, true);
 
     // show temperature factor annotations?
     if (hideTFrows)