JAL-629 Add --seqid for non-subval use, make arg value naming more consistent in...

[jalview.git] / src / jalview / bin / argparser / Arg.java

diff --git a/src/jalview/bin/argparser/Arg.java b/src/jalview/bin/argparser/Arg.java
index 763a6f2..d77c075 100644 (file)
--- a/src/jalview/bin/argparser/Arg.java
+++ b/src/jalview/bin/argparser/Arg.java
@@ -17,7 +17,7 @@ public enum Arg
   TYPE, FORMAT, OVERWRITE, TEXTRENDERER, QUIT, CLOSE, DEBUG("d"), TRACE,
   QUIET("q"), ARGFILE, NEW, NPP("n++"), SUBSTITUTIONS, INITSUBSTITUTIONS,
   NIL, SPLASH, SETARGFILE, UNSETARGFILE, WEBSERVICEDISCOVERY, ALL, BACKUPS,
-  TESTOUTPUT;
+  TESTOUTPUT, SEQID;
 
   public static enum Opt
   {
@@ -111,6 +111,8 @@ public enum Arg
     TITLE.setOptions(Opt.STRING, Opt.LINKED);
     PAEMATRIX.setOptions(Opt.STRING, Opt.LINKED, Opt.MULTI,
             Opt.ALLOWSUBSTITUTIONS);
+    SEQID.setOptions(Opt.STRING, Opt.LINKED, Opt.MULTI,
+            Opt.ALLOWSUBSTITUTIONS);
     NOSTRUCTURE.setOptions(Opt.UNARY, Opt.LINKED);
     STRUCTURE.setOptions(Opt.STRING, Opt.LINKED, Opt.MULTI,
             Opt.ALLOWSUBSTITUTIONS);