JAL-4353 Add secondary Types for Args, for STRUCTUREIMAGE Type and restrict structure...

[jalview.git] / src / jalview / bin / argparser / BootstrapArgs.java

diff --git a/src/jalview/bin/argparser/BootstrapArgs.java b/src/jalview/bin/argparser/BootstrapArgs.java
index 80e08c5..51f8147 100644 (file)
--- a/src/jalview/bin/argparser/BootstrapArgs.java
+++ b/src/jalview/bin/argparser/BootstrapArgs.java
@@ -160,10 +160,12 @@ public class BootstrapArgs
               argsOptions.add(opt);
             }
           }
-          Type t = a.getType();
-          if (!argsTypes.contains(t))
+          for (Type t : a.getTypes())
           {
-            argsTypes.add(t);
+            if (!argsTypes.contains(t))
+            {
+              argsTypes.add(t);
+            }
           }
         }