/**
* Data structure to hold and manipulate a multiple sequence alignment
- */
-/**
- * @author JimP
*
+ * @author JimP
*/
public class Alignment implements AlignmentI
{
+ private static final SequenceGroup[] NO_GROUPS = new SequenceGroup[0];
+
private Alignment dataset;
private List<SequenceI> sequences;
private List<AlignedCodonFrame> codonFrameList;
- private static final SequenceGroup[] noGroups = new SequenceGroup[0];
-
/*
* persistent object to hold result of findAllGroups(SequenceI)
*/
int gSize = groups.size();
if (gSize == 0)
{
- return noGroups;
+ return NO_GROUPS;
}
groupsForSequence.clear();
for (int i = 0; i < gSize; i++)