*/
AlignmentAnnotation[] getAlignmentAnnotation();
+ /**
+ * Returns a list of annotations matching the given calc id, or an empty list
+ * if calcId is null
+ *
+ * @param calcId
+ * @return
+ */
Iterable<AlignmentAnnotation> findAnnotation(String calcId);
Iterable<AlignmentAnnotation> findAnnotations(SequenceI seq,